Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mengenilla_20moldrzyki_20[genbank_20GCA_5F000281935.1_202012-07-27] 94,953 sequences; 155,727,465 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq27572 89.7 6e-13 seq54457 87.8 2e-12 seq5310 84.2 3e-11 >seq27572 Length=212 Score = 89.7 bits (98), Expect = 6e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 62611 CACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTT 62670 ||||||| || || || || || ||||| | ||||| || |||| || || | || Sbjct 1 CACAACTGGCTTCCAAAGCTCCATAATACAACGTTTCAAAAATCTGCTGGTTCAACAATT 60 Query 62671 GTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAA 62730 |||||| ||| ||| | ||||| || | | |||||| || ||||| ||||| | Sbjct 61 TCGCTTCCTTGCTTTCATACGGATATTTCATCAATGCAAACGCATCTGCTAAGCCTTGGA 120 Query 62731 CACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAAT 62790 || || || || || | ||||| || || || ||| | |||||| | ||| |||| Sbjct 121 TTCCGATTCCAATTGGACGATGTCGTTTGTTTGACCGTTCCGTTTCTGGTAGAGGGTAAT 180 Query 62791 AATTAATATCTATAATTTTATTGAGATTT 62819 |||| || ||||||||||| |||||| Sbjct 181 AATTGCGGTCGATAATTTTATTCAGATTT 209 >seq54457 Length=626 Score = 87.8 bits (96), Expect = 2e-12 Identities = 216/322 (67%), Gaps = 8/322 (2%) Strand=Plus/Plus Query 62611 CACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTT 62670 ||||||| || || || || || ||||| | ||||| || |||| | || | || Sbjct 228 CACAACTGGCTTCCAAAGCTCCATAATACAACGTTTCAAAAATCTGTTGGTTCAACAATT 287 Query 62671 GTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAA 62730 |||||| ||| ||| | ||||| || | | |||||| || ||||| ||||| | Sbjct 288 TCGCTTCCTTGCTTTCATACGGATATTTCATCAATGCAAACGCATCTGCTAAGCCTTGGA 347 Query 62731 CACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAAT 62790 || || || || || | ||||| || || || ||| | |||||| | ||| |||| Sbjct 348 TTCCGATTCCAATTGGACGATGTCGTTTGTTTGACCGTTCCGTTTCTGGTAGAGGGTAAT 407 Query 62791 AATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTC-AGT 62849 |||| || ||||||||||| |||||| | | | | ||| | || || ||| | | Sbjct 408 AATTGCGGTCGATAATTTTATTCAGATTTTTCGCCACAAATTTAGCAACCTCTTTCAAAT 467 Query 62850 TTGAGAAAATCAAAT---CGCCC--ATCTA-TTACAAACATGTTCAAGGCAACAGATGCC 62903 || ||||| || || ||| | | | | ||||||| | || | |||| ||||| Sbjct 468 GTGTGAAAA-CATATTTGCGCTCAGAACGATTTACAAATTTATTGACAGCAATTGATGCT 526 Query 62904 AGATTACAAACGGCTACCTCAT 62925 | || |||||||| | ||||| Sbjct 527 AAGTTGCAAACGGCGATCTCAT 548 >seq5310 Length=1504 Score = 84.2 bits (92), Expect = 3e-11 Identities = 202/303 (67%), Gaps = 11/303 (4%) Strand=Plus/Plus Query 33340 ATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 33399 || ||||| ||| ||| | | || ||||||| || || ||||| ||||| ||||| Sbjct 472 ATAAGTTCATTGCTAAAAGACAAGCCAGGCATTAAGCGTCGTTTTTTGAGCCAGAATATA 531 Query 33400 GAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCT 33459 | || || ||| || ||||| || ||||| || || ||||| ||||| || | || Sbjct 532 GCGGCAAAACTTCCGGAGAAGAAAATGCCTTCGACAGCCGCAAAAGCAATCAGCCGTTCA 591 Query 33460 CCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 33516 || | || | | || | ||||| ||| ||||||||||| |||||||| ||| Sbjct 592 CCGAATGTTGCATTCTGATTTGAAATCCATTTTAAGGCCCAATCGGCTTTCTTTTTAACA 651 Query 33517 CAAGGCATCGTTTCTATGGCATT---AAAGAGATAGtttttttCATTACT-ATCTTTAAC 33572 || || ||||| || ||||| || || || || ||| | | | ||||| Sbjct 652 CATGGAATCGTAGTGATTGCATTGAAAAGGAAATCACGTTCTTCTGGATTCGTGATTAAC 711 Query 33573 ATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAA 33632 | | ||| |||| || |||||||||| |||||| ||| || |||||||| Sbjct 712 ----GACTGGATTAAAATACCGTACATTTCCGCATGAATCGATTCTATTTGAATCTGAAA 767 Query 33633 TCC 33635 ||| Sbjct 768 TCC 770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622207816181480