Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mengenilla_20moldrzyki_20[genbank_20GCA_5F000281935.1_202012-07-27] 94,953 sequences; 155,727,465 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq18871 129 5e-25 seq47143 89.7 4e-13 >seq18871 Length=4271 Score = 129 bits (142), Expect = 5e-25 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 || ||||||||||||||| ||||| ||||| |||||||| ||||| ||| || | Sbjct 3218 AAGAATGCAAATATTTGTGAAAACTTTAACTGGTAAAACGATTACTTTGGAAGTCGAGTC 3159 Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 || || || | | | | ||| ||||||| |||||||| ||| | || ||| Sbjct 3158 ATCTGACACAATTGAAAACGTTAAGGCAAAAATCCAGGACAAAGAAGGAATTCCGCCAGA 3099 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 |||||| || | || ||||| ||||||||||| ||||| || | |||| || Sbjct 3098 TCAACAACGATTAATTTTTGCTGGCAAACAATTAGAAGACGGCCGTACGTTATCCGACTA 3039 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| ||||| |||||||||||||| |||||||| | ||||| || ||||| Sbjct 3038 CAACATCCAAAAGGAATCTACTCTGCATTTGGTATTACGTTTACGTGGCGGGAT 2985 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||||||||||||||| || ||||| || || ||| |||| ||| Sbjct 2759 ATGCAAATTTTTGTAAAAACATTAACTGGAAAAACAATAACGTTAGAAGTTGAACAATCA 2700 Query 28614 GAGACGGTGGCCGA-TCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | | |||| |||| || || ||||| || | || |||||| Sbjct 2699 GATACCATTGAAAACGTTAAAGCGAAAATTC-AGGATAAAGAAGGTATTCCACCAGATCA 2641 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | | || || || || ||||| ||||||||| |||| | | |||||||| Sbjct 2640 ACAACGGTTGATTTTCGCTGGTAAACAGTTGGAAGATGGCCGAACTTTATCTGATTATAA 2581 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| |||||||| || || || | || || | ||||||| || || Sbjct 2580 TATTCAGAAAGAATCCACCCTCCATCTAGTTCTACGGCTACGAGGTGGAAT 2530 >seq47143 Length=13737 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 ||||||||||| ||||| ||||| ||||| |||||||||||||| ||| || || Sbjct 1043 AAAATGCAAATTTTTGTGAAAACTTTAACTGGTAAAACCATTACGCTTGAAGTCGAGCCA 984 Query 28611 TCAGAGACGGTGGCCGAT-CTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 || || ||| | | || | |||| |||| || || || || || | || ||| Sbjct 983 TCCGATACGATTGAAAATGTTAAAGCGAAAATTC-AAGATAAGGAAGGTATTCCTCCAGA 925 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 |||||| | | || || || || |||||| | |||||| | ||| || || || Sbjct 924 TCAACAACGGTTAATATTCGCCGGAAAACAACTAGAAGATGGAAGAACGTTGAATGACTA 865 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||| ||||| |||||||| || |||| | || ||| | ||||| || || Sbjct 864 TAATATTCAGAAAGAATCCACGTTGCATTTAGTCTTACGTTTACGCGGTGG 814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424912504682187