Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mengenilla_20moldrzyki_20[genbank_20GCA_5F000281935.1_202012-07-27] 94,953 sequences; 155,727,465 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq67124 113 1e-19 seq50344 98.7 2e-15 seq39657 91.5 3e-13 seq41170 86.0 1e-11 >seq67124 Length=7542 Score = 113 bits (124), Expect = 1e-19 Identities = 124/164 (76%), Gaps = 6/164 (4%) Strand=Plus/Plus Query 305324 GATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAA 305383 |||| |||| | |||||| | || || | ||||||||||| |||||||| ||| | Sbjct 1079 GATTTGGTTATATTCAATCGACAGCCCACGTTGCATAAAATGAGTATGATGGGCCATCGA 1138 Query 305384 GTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACG---CCTTAT 305440 |||||||| || || | | |||||||| | ||| | || ||||||| || ||| Sbjct 1139 GTCAAAGTGCTACCTTGGTCAACATTTCGCATGAATCTCAG---TTGTACGACTCCGTAT 1195 Query 305441 AATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 ||||| ||||||||||| |||||||||||| ||||||| || || Sbjct 1196 AATGCTGATTTTGATGGCGATGAAATGAATCTGCATGTGCCGCA 1239 >seq50344 Length=14128 Score = 98.7 bits (108), Expect = 2e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 305294 GATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCA 305353 ||||||||| || || | | | | |||||| || ||||| ||| |||| || Sbjct 5812 GATATTGTTGAAAGGCACGTCATTAATAATGATATTGTACTGTTTAATCGGCAGCCGAGT 5871 Query 305354 CTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGA-CATTTCG 305412 | |||||| ||||||| ||| | |||| | ||| | | || || | ||||||| Sbjct 5872 TTACATAAATTGTCTATTATGTCACATAGAACTAAAAT-TCATACACATAAAACATTTCG 5930 Query 305413 ATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATAT 305472 ||| || | | ||| |||||||||||| ||||| || || ||||| |||||||||||| | Sbjct 5931 ATTCAACGAATGTGTTTGTACGCCTTACAATGCTGACTTCGATGGTGATGAAATGAATCT 5990 Query 305473 GCATGTACCTCAATCA 305488 |||| |||| ||| || Sbjct 5991 GCATTTACCACAAACA 6006 >seq39657 Length=3144 Score = 91.5 bits (100), Expect = 3e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 304946 CAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGT 305005 |||| ||| || | |||||||||| ||| | || | || || ||||| || ||| Sbjct 2310 CAAAAATCAGGAAAGCCTTTAAAGGCACTTAAGGCGCGTCTAAAGGGCAAAGAAGGGCGT 2369 Query 305006 ATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCT 305065 ||| |||| || |||||||||||||||||||||| |||||||||| ||| || || || Sbjct 2370 ATTAGAGGCAACTTAATGGGAAAACGTGTTGATTTCAGTGCAAGAACTGTCATTACGCCA 2429 Query 305066 GAT 305068 ||| Sbjct 2430 GAT 2432 >seq41170 Length=8096 Score = 86.0 bits (94), Expect = 1e-11 Identities = 286/431 (66%), Gaps = 27/431 (6%) Strand=Plus/Plus Query 110715 ACTGCAAAATATGTGAATCAAGGTGGTAAGAGAAA---TGGCTCATTTGCTATCTATCTC 110771 || ||| |||||||| ||||||| ||||| |||| ||| || | || || ||| | Sbjct 6113 ACGGCACAATATGTGGATCAAGGCGGTAACAGAAGACCTGGTTCTATAGCCATTTATTTA 6172 Query 110772 GAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTT-CGTAAAAATCAAGGATTTGA 110830 || || |||||| | || || || ||||| | ||||| || || ||| | || || Sbjct 6173 GAGCCATGGCATGCGGAAATTTTCGAATTTCTC-AACTTACGGAAGAATGACGGC---GA 6228 Query 110831 AGAACAAA---GAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAA 110887 ||||||| | || || | || | || | ||||| ||||||| |||||||| Sbjct 6229 CGAACAAATGCGTTGTCGCGACCTTTTCTTGGCCTTATGGATACCAGATTTGTTCATGAA 6288 Query 110888 ACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATC 110947 |||||| | || |||| ||| | ||||| ||| || | ||| || | Sbjct 6289 GCGTGTTGATGACGATGGTGACTGGAGCTTGATGTGCCCTAGTCAGTGTCCCGGCTTGAA 6348 Query 110948 TGA-TGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGT 111006 ||| ||| | || || | || |||| ||||||||||||||||| |||| ||||| | Sbjct 6349 TGAGTGT-TGGGGTGAAAAATTCGAAGCGCTTTACGAAAAATATGAGCAAGATGGCAATT 6407 Query 111007 ---TTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCA---AAATCCTTGAAT-CACAA 111059 | ||| | | || ||| |||| ||| |||| |||| | ||| | | ||| Sbjct 6408 ACATCCGC---CGAGTTAAGGCT--AGAAATTT-ATTCAATGAAATTC-TGATTGCTCAA 6460 Query 111060 GTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAA 111119 | |||||||| | || | ||| | || |||||| |||||||||| |||||| Sbjct 6461 ATGGAAACTGGTAACCCGTTTATGCTCTACAAAGATGCCTGTAATCGCAAAAGTAATCAG 6520 Query 111120 ATGAATTTAGG 111130 | |||||||| Sbjct 6521 AAAAATTTAGG 6531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185368940978833