Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mengenilla_20moldrzyki_20[genbank_20GCA_5F000281935.1_202012-07-27] 94,953 sequences; 155,727,465 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq5642 159 3e-34 seq5310 116 3e-21 seq64532 105 5e-18 >seq5642 Length=9115 Score = 159 bits (176), Expect = 3e-34 Identities = 272/395 (69%), Gaps = 6/395 (2%) Strand=Plus/Minus Query 19426 CCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAA 19485 || || ||||| ||||| || ||| | || || |||||||||| ||| | ||||| | Sbjct 7960 CCACCGAAAATCGTAAACGGCCCTCAGATTTTGGATAAATATGTTGGTGAGTCGGAGGCG 7901 Query 19486 AATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGT 19545 ||| |||| || |||||||| || ||||| |||||| | || | || | | | ||| Sbjct 7900 AATATACGGCGCTTGTTTGCAGATGCTGAGGAAGAAGAGAAGAAACTGGGTCCCTATAGT 7841 Query 19546 TCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTT----- 19600 ||||||||||| || | |||||| | || || || || ||| |||||||| Sbjct 7840 GGATTGCACATTATCATTTTTGATGAAATCGATGCGATTTGCAAGTCAAGAGGTTCAGCT 7781 Query 19601 -CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGT 19659 ||||| | ||| || || || || ||||| ||||| | || || ||| | || ||| Sbjct 7780 ACTGGTAGTACTGGTGTCCACGATACCGTTGTTAATCAGTTGCTTTCGAAAATCGATGGT 7721 Query 19660 GTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGAC 19719 ||| | ||| | ||||| |||| | || |||||||| ||| | || | || || Sbjct 7720 GTTGAACAATTAAATAACGTTTTGATAATAGGCATGACAAATCGCAAAGATATGATTGAT 7661 Query 19720 AGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAA 19779 || || | ||||||||||| || || || | || |||||| ||||| || ||| Sbjct 7660 GAAGCTTTGCTGCGACCCGGTCGTTTTGAGGTACAAATGGAAATTGGATTACCGGACGAA 7601 Query 19780 TGTGGACGTGTGGAAATTTTAAACATACATACATC 19814 |||||| || | ||| | || || |||||||| Sbjct 7600 AAAGGACGTTTGCAGATTCTCAAAATTCATACATC 7566 >seq5310 Length=1504 Score = 116 bits (128), Expect = 3e-21 Identities = 156/215 (73%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 44070 TTAAACATAAAGCAGACTGGGCCCTTAAATGGATA--AATTCA-AATGATTCTTTTGGAG 44126 ||||| | ||||| || |||||| | |||||||| || ||| |||| | || || | Sbjct 649 TTAAAAAGAAAGCCGATTGGGCCTTAAAATGGATTTCAAATCAGAATGCAACATTCGGTG 590 Query 44127 AACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCA 44186 |||| || | || ||||| | ||| |||||||||||||| || ||| ||||| || | Sbjct 589 AACGGCTGATTGCTTTTGCGGCTGTCGAAGGCATTTTCTTCTCCGGAAGTTTTGCCGCTA 530 Query 44187 TATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAA 44246 |||| ||| | || |||||| | || |||||||| ||| | ||| ||||| | ||| Sbjct 529 TATTCTGGCTCAAAAAACGACGCTTAATGCCTGGCTTGTCTTTTAGCAATGAACTTATAT 470 Query 44247 GTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 ||||| ||||| | ||||| | ||||| ||| Sbjct 469 CGCGTGACGAAGGTTACCATTGTCAGTTTGCGTGC 435 >seq64532 Length=2006 Score = 105 bits (116), Expect = 5e-18 Identities = 223/333 (67%), Gaps = 0/333 (0%) Strand=Plus/Plus Query 40865 AGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACAC 40924 ||||||| | || ||| ||||||||||||| | | | || ||||| || || ||| Sbjct 1039 AGGTGATTTAGGCCCTATTTATGGATTTCAATGGAGGCACTTTGGCGCCAAGTATTGTGG 1098 Query 40925 TATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGAT 40984 ||| ||||| ||||||||||| ||||||||||| ||||| ||||| || Sbjct 1099 AATGCGAGAAAATTATGATAATAAAGGAATTGATCAATTACAAAATGTTATTGATACCAT 1158 Query 40985 TAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACA 41044 ||| |||| || || | |||||| ||| || ||||| || | | | | | Sbjct 1159 TAAGAATAATCCAAATGATAGAAGGATAATAATGTCAGCCTGGAATCCGATGCAGTTGCC 1218 Query 41045 TTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACT 41104 ||||| | || || || |||| || |||||||| || ||||| | | Sbjct 1219 AGAAATGGCGCTTCCTCCATGCCATTGCTTGGTGCAGTTTTATGTAGCTAATGGATATTT 1278 Query 41105 GTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGC 41164 || ||||||||||||||| | || | ||||||||| |||| || || || || || || Sbjct 1279 ATCGTGTCAATTGTATCAACGTTCCGCTGACATGGGCTTAGGAGTTCCTTTCAATATTGC 1338 Query 41165 GAGTTATGCTCTGCTCACGTATATGATTGCACA 41197 || || ||| | | || |||||| | || || Sbjct 1339 AAGCTACGCTTTATTAACTTATATGGTAGCTCA 1371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396996048142765