Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mengenilla_20moldrzyki_20[genbank_20GCA_5F000281935.1_202012-07-27] 94,953 sequences; 155,727,465 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq18871 132 3e-26 seq47143 114 9e-21 >seq18871 Length=4271 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| |||||||||||| | ||||| ||| ||||| | || ||||| | Sbjct 3215 AATGCAAATATTTGTGAAAACTTTAACTGGTAAAACGATTACTTTGGAAGTCGAGTCATC 3156 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 ||| | || || || |||||| ||||||||||| ||||| || || Sbjct 3155 TGACACAATTGAAAACGTTAAGGCAAAAATCCAGGACAAAGAAGGAATTCCGCCAGATCA 3096 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 ||||| ||||||||||| || |||||||| || |||| || | || ||||| ||||| Sbjct 3095 ACAACGATTAATTTTTGCTGGCAAACAATTAGAAGACGGCCGTACGTTATCCGACTACAA 3036 Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||| || ||| |||||||||| || ||||| |||||||| Sbjct 3035 CATCCAAAAGGAATCTACTCTGCATTTGGTATTACGTTTACGTGGCGG 2988 Score = 104 bits (114), Expect = 2e-17 Identities = 163/230 (71%), Gaps = 5/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| ||||| | ||||| ||| ||| ||| | || || || | Sbjct 2986 ATGCAGATTTTTGTAAAAACGTTAACTGGAAAAACTATAACATTGGAAGTGGAGTCTTCA 2927 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || ||| || || |||||||| ||| |||| || | Sbjct 2926 GACACAATTGAAAAT--GTTAAAGCCAAGATCCAGGACAAAGAGGGTATTCCACCAGATC 2869 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||||||||||||| || ||||| || || |||| |||| || || ||||||| Sbjct 2868 AGCAGCGGTTAATTTTTGCTGGCAAACAGTTAGAGGACGGTCGCACATTATCTGATTACA 2809 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 | || || || || | || |||||||| || || |||||||| |||||| Sbjct 2808 ATATTCAGAAGGATCG-ACCTTGCATTTAGTATTACGTTTGCGCGGCGGC 2760 Score = 102 bits (112), Expect = 6e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| ||||| || | || || ||| || || | || ||||| | | Sbjct 2252 ATGCAAATTTTCGTGAAGACGTTGACGGGAAAAACGATAACGTTGGAAGTCGAGGCCTCA 2193 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| |||||| ||||| ||||| |||||| ||||| || | Sbjct 2192 GATACAATTGAAAAT--GTCAAAGCGAAAATTCAAGACAAGGAAGGTATTCCGCCAGATC 2135 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || ||||||||||| ||||||||| | || || | || | || || ||||| | Sbjct 2134 AGCAGCGTTTAATTTTTGCTGGAAAACAACTTGAGGATGGCCGAACGTTATCTGATTATA 2075 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || |||||||| ||||||||| || ||||| || || || || || Sbjct 2074 ATATTCAAAAAGAATCCACTTTGCACTTAGTTTTACGCTTACGCGGTGG 2026 Score = 102 bits (112), Expect = 6e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || || |||||| ||||| || |||||||| ||||||||||| || ||||||||||| Sbjct 2387 GATAAGGAAGGTATTCCGCCTGATCAGCAACGATTAATTTTTGCTGGTAAACAATTGGAA 2328 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | | || |||||||| || || ||||| || |||||||| || ||| Sbjct 2327 GATGGCCGAACTCTTTCGGATTACAATATACAGAAAGAATCGACGTTGCATTTAGTGTTG 2268 Query 28003 CGTTTGCGTGGCGG 28016 ||||||||||| || Sbjct 2267 CGTTTGCGTGGTGG 2254 >seq47143 Length=13737 Score = 114 bits (126), Expect = 9e-21 Identities = 167/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 |||||||||||||||||||||||| | ||||| ||| ||||| |||| ||||| Sbjct 1043 AAAATGCAAATTTTTGTGAAAACTTTAACTGGTAAAACCATTACGCTTGAAGTCGAGCCA 984 Query 27847 ACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 |||| |||| | ||| || ||| ||||| || || |||||| |||| | Sbjct 983 TCCGATACGATTGAAAAT--GTTAAAGCGAAAATTCAAGATAAGGAAGGTATTCCTCCAG 926 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||||||||| || |||||||||||| | || || | | | | ||| || | Sbjct 925 ATCAACAACGGTTAATATTCGCCGGAAAACAACTAGAAGATGGAAGAACGTTGAATGACT 866 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCG 28018 | || || || ||||| ||| |||||||| || || ||||| || || |||| Sbjct 865 ATAATATTCAGAAAGAATCCACGTTGCATTTAGTCTTACGTTTACGCGGTGGCG 812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355450581907431