Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq10678 93.3 4e-14 >seq10678 Length=68604 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 17216 TTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATG 17275 ||||| | | | ||| | ||||| || || ||||| | ||||||||||| || || Sbjct 45511 TTTTCTTTTGGATCGGTAATATAAGTTTCAATGAGCAAAGAATACATTTCGGAATGAATA 45452 Query 17276 TTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACG 17335 ||||| ||||| || || || ||||| || || || ||||| || | || || ||| Sbjct 45451 TTCTCTATGGCCATTTGGAAGCCGTAGAAACAACGTGCTTCAGCGACTTTCACCTCCTGA 45392 Query 17336 TAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAAT 17395 ||||| ||| ||||| ||||| || || || || ||||||||||| ||||| Sbjct 45391 CTGAATCTTTCAATCAGATTCTCGTTAACAATACCATCAGAAGCGGCGAAAAATGCCAAG 45332 Query 17396 ATATGCTTAATGAAATATTTTTCGTC 17421 | ||| || || ||| ||||||| Sbjct 45331 ACATGAGAGATAAAGTATCTTTCGTC 45306 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 16788 CGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTA 16847 ||| |||||| || || |||||||| ||||| | ||||| | | ||| ||||| |||| Sbjct 46271 CGAATAATCTGTCTGCAACAAATTCGATATAGTTACACATGAGTGTGCAATTCATGCCTA 46212 Query 16848 TAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAA 16907 | || ||||| | || | |||||||||| | || || | || || ||| | | Sbjct 46211 TCAGCTCGACCGGCAACGCCTGCGTCAAAAATTCCTTTTCGATTTCCACAGCATCCATTA 46152 Query 16908 TAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATG 16967 | || || ||||| ||||| | ||| || ||||||||||| | ||||| Sbjct 46151 TGATTGATTTTACACGTTCAAATGACGGCTTTTGTACAATGTGTTTAAACATTAAACATG 46092 Query 16968 CGAAATCGCAATGTAATCCCT 16988 | |||||||| |||||||||| Sbjct 46091 CAAAATCGCAGTGTAATCCCT 46071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517467088332480