Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq10234 134 2e-26 seq10678 100 3e-16 seq5599 95.1 1e-14 >seq10234 Length=192330 Score = 134 bits (148), Expect = 2e-26 Identities = 232/330 (70%), Gaps = 14/330 (4%) Strand=Plus/Plus Query 53550 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 53609 |||| |||||||| ||||| | |||||| ||| | ||||| ||||||||| |||||| Sbjct 2462 TACCAATAGGTCTGTGTCTTTGATTAGATGTTTTCGTCTCTGGGATAGGATAAAAATTAA 2521 Query 53610 TATCTATAATTTTATTGAGGTTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGA 53666 || || | ||||| || || | |||||||| |||| | || || ||||| Sbjct 2522 CGTCAATGACTTTATCTAGATTGCGGGTGACAATT--TTTG-CGACTGTTTTAAGTTTAT 2578 Query 53667 GAAAATCAAA-----TTGTCCATCTATTA-CAAACATGTTCAATGCAATAGATGCCAGAT 53720 ||||||||| | || | ||||| |||||||||| | ||||||||||| | || Sbjct 2579 CAAAATCAAAAGTCTTGGTATCTGTATTAACAAACATGTTGACAGCAATAGATGCTAAAT 2638 Query 53721 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 53780 | || || || || || || | | | ||||| | || ||||| || ||||| |||| Sbjct 2639 TGCACACAGCAACTTCTCCAGGACCAGAATATTCAACAATTTCAGTACACAGATTGCTAC 2698 Query 53781 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG-TTACACGCATCCTTATAAAGA 53839 | ||||| || |||| || || ||||| | |||| | ||||| ||| |||||||| Sbjct 2699 ATTTGATAGTGCCTATATGCTGGTGATT-CGATTTTCGATTACATTGATCTTTATAAAGC 2757 Query 53840 ATGAATGGCGTACCAGTTTCAATCTGGGAT 53869 || | || || ||||| || | |||||| Sbjct 2758 ATATAAGGTGTTCCAGTCTCTACTTGGGAT 2787 Score = 127 bits (140), Expect = 2e-24 Identities = 182/254 (72%), Gaps = 2/254 (1%) Strand=Plus/Plus Query 54431 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGT 54489 || ||||||| || || ||||| |||||||| || |||||| || || ||||||||| Sbjct 3603 GCGTTAAATAGTGTTGGTGAAGCATGCGTAAAATATCGTTCAGACAAATA-ATTGTACGT 3661 Query 54490 CTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 54549 ||| |||||| ||| || || || ||||| || || || || | ||| ||||| || Sbjct 3662 CTCTATAGCTTTGTCAATGTCATTTTCGTGAATACCAACAGCCACTCTCATCAACATATG 3721 Query 54550 CTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTT 54609 ||||| || ||||| || ||| || |||||||||| ||| | | || | ||||| Sbjct 3722 TTGAGGCCTCTCAACTATTTTGCCATTAATTTTCAGCAGATAGCTTCTCTCGAGTGTTTT 3781 Query 54610 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATC 54669 |||||||| ||| || || |||||||| || || || ||| | || | ||| | || Sbjct 3782 AAAACCAATATAATTATAATTGAAGTCTCGATCATATATTATAGCAGAATCCAGTCTCTC 3841 Query 54670 CTTATATTTGTTAA 54683 | || || |||| Sbjct 3842 CGCATTATTCTTAA 3855 Score = 98.7 bits (108), Expect = 1e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 53093 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 53152 || || |||| ||||||| ||| | || ||| ||| || ||||||||||| || | Sbjct 1813 ATATCTTCATCCCATAATCCTCTGGCAGTCAAATCTCGTAGCAGATGCGGATTGACGATG 1872 Query 53153 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 53212 ||| |||||||| ||||| | || ||| ||||| || || |||||||| | || Sbjct 1873 ACAAACTCTCCAGATAATACGCGCCTCACGTAGATATTGCTCGTGTACGGTTCAATGGAT 1932 Query 53213 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 53259 || ||||| || ||||| || || || || || || ||||||||||| Sbjct 1933 TCGTTATTCCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGC 1979 >seq10678 Length=68604 Score = 100 bits (110), Expect = 3e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692 |||||||| | |||||||| ||||| | |||||||||||||||| |||||| ||| || Sbjct 44964 ACTTCTTCTATAGTCCAAAACGATGCTACAGCCTTTTTATACATATCCCAGATATCAGGA 44905 Query 24693 TATTGAATTGGAAAAATAACAAATCTATTTGGA 24725 |||||||| |||||||| || || | ||||||| Sbjct 44904 TATTGAATAGGAAAAATTACGAAACGATTTGGA 44872 Score = 96.9 bits (106), Expect = 4e-15 Identities = 164/235 (70%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 24384 TTTTCATTACTATCTTTAACATATGTATCAATCA--AAAGACTATACATTTCCGAATGAA 24441 ||||| || ||| ||| ||| || ||||| | ||||| ||||||||| ||||||| Sbjct 45511 TTTTCTTTTGGATCGGTAATATAAGTTTCAATGAGCAAAGA--ATACATTTCGGAATGAA 45454 Query 24442 TGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTA 24501 | || || ||||||||||| || ||||||||||| | || || | | | || || Sbjct 45453 TATTCTCTATGGCCATTTGGAAGCCGTAGAAACAACGTGCTTCAGCGACTTTCACCTCCT 45394 Query 24502 TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 24561 || |||| ||| | ||| || || || || || ||| || || ||||| |||| Sbjct 45393 GACTGAATCTTTCAATCAGATTCTCGTTAACAATACCATCAGAAGCGGCGAAAAATGCCA 45334 Query 24562 ATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT---ATTCCAATCATT 24613 | ||||| ||||| ||| ||||||| | ||||||| || |||||| || Sbjct 45333 AGACATGAGAGATAAAGTATCTTTCGTCGGAACTTAGTTTTTCATCCCAATCCTT 45279 >seq5599 Length=16320 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 ||||||| | || |||||||| ||||| ||||| |||| ||| |||||||| |||| Sbjct 13214 CACTAAAGACCTTCTTTGTTTCCTTGTGCAGATTGGATATGGCAATTCTAGCTGCTAAGG 13155 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACA-AGTGGCTGCTATTTCGGCTGTCAGAGTGTCC 54886 | || ||||| ||||| || || | || ||| || || |||| |||| || | | ||| Sbjct 13154 TTGCGTAATCTGGATGCTG-GTTGATCATAGTTGCCGCAGTTTCAGCTGCCAAATTATCC 13096 Query 54887 AATTCTACCGTTGTTACTCCA 54907 ||||| | |||||||||||| Sbjct 13095 AATTCGATAGTTGTTACTCCA 13075 Score = 82.4 bits (90), Expect = 9e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 53384 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 53443 ||| |||||| || || || |||| | |||||| ||| ||||| || |||| ||| Sbjct 14997 CCTTCATATGACTCATAAGGACCTTTTTGGGCAGCTATTTCGCAACTAGCTTCTAGAGCA 14938 Query 53444 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 53503 || ||||||| || || || || | || || | | || || |||| |||||| Sbjct 14937 CCATAATAAAGAGTCTCAAAAATTTGGACGTTGAGTTTATTAGCCTCTTGGCTTTCAAAT 14878 Query 53504 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 53553 ||||| | | | || ||||| |||||||| ||||| ||||||||||| Sbjct 14877 GGATATCTCATTAAGATGAACGCATCTGCTAACCCTTGTACACCAATACC 14828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593631532433280