Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq10234 134 2e-26
seq10678 100 3e-16
seq5599 95.1 1e-14
>seq10234
Length=192330
Score = 134 bits (148), Expect = 2e-26
Identities = 232/330 (70%), Gaps = 14/330 (4%)
Strand=Plus/Plus
Query 53550 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 53609
|||| |||||||| ||||| | |||||| ||| | ||||| ||||||||| ||||||
Sbjct 2462 TACCAATAGGTCTGTGTCTTTGATTAGATGTTTTCGTCTCTGGGATAGGATAAAAATTAA 2521
Query 53610 TATCTATAATTTTATTGAGGTTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGA 53666
|| || | ||||| || || | |||||||| |||| | || || |||||
Sbjct 2522 CGTCAATGACTTTATCTAGATTGCGGGTGACAATT--TTTG-CGACTGTTTTAAGTTTAT 2578
Query 53667 GAAAATCAAA-----TTGTCCATCTATTA-CAAACATGTTCAATGCAATAGATGCCAGAT 53720
||||||||| | || | ||||| |||||||||| | ||||||||||| | ||
Sbjct 2579 CAAAATCAAAAGTCTTGGTATCTGTATTAACAAACATGTTGACAGCAATAGATGCTAAAT 2638
Query 53721 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 53780
| || || || || || || | | | ||||| | || ||||| || ||||| ||||
Sbjct 2639 TGCACACAGCAACTTCTCCAGGACCAGAATATTCAACAATTTCAGTACACAGATTGCTAC 2698
Query 53781 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG-TTACACGCATCCTTATAAAGA 53839
| ||||| || |||| || || ||||| | |||| | ||||| ||| ||||||||
Sbjct 2699 ATTTGATAGTGCCTATATGCTGGTGATT-CGATTTTCGATTACATTGATCTTTATAAAGC 2757
Query 53840 ATGAATGGCGTACCAGTTTCAATCTGGGAT 53869
|| | || || ||||| || | ||||||
Sbjct 2758 ATATAAGGTGTTCCAGTCTCTACTTGGGAT 2787
Score = 127 bits (140), Expect = 2e-24
Identities = 182/254 (72%), Gaps = 2/254 (1%)
Strand=Plus/Plus
Query 54431 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGT 54489
|| ||||||| || || ||||| |||||||| || |||||| || || |||||||||
Sbjct 3603 GCGTTAAATAGTGTTGGTGAAGCATGCGTAAAATATCGTTCAGACAAATA-ATTGTACGT 3661
Query 54490 CTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 54549
||| |||||| ||| || || || ||||| || || || || | ||| ||||| ||
Sbjct 3662 CTCTATAGCTTTGTCAATGTCATTTTCGTGAATACCAACAGCCACTCTCATCAACATATG 3721
Query 54550 CTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTT 54609
||||| || ||||| || ||| || |||||||||| ||| | | || | |||||
Sbjct 3722 TTGAGGCCTCTCAACTATTTTGCCATTAATTTTCAGCAGATAGCTTCTCTCGAGTGTTTT 3781
Query 54610 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATC 54669
|||||||| ||| || || |||||||| || || || ||| | || | ||| | ||
Sbjct 3782 AAAACCAATATAATTATAATTGAAGTCTCGATCATATATTATAGCAGAATCCAGTCTCTC 3841
Query 54670 CTTATATTTGTTAA 54683
| || || ||||
Sbjct 3842 CGCATTATTCTTAA 3855
Score = 98.7 bits (108), Expect = 1e-15
Identities = 122/167 (73%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 53093 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 53152
|| || |||| ||||||| ||| | || ||| ||| || ||||||||||| || |
Sbjct 1813 ATATCTTCATCCCATAATCCTCTGGCAGTCAAATCTCGTAGCAGATGCGGATTGACGATG 1872
Query 53153 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 53212
||| |||||||| ||||| | || ||| ||||| || || |||||||| | ||
Sbjct 1873 ACAAACTCTCCAGATAATACGCGCCTCACGTAGATATTGCTCGTGTACGGTTCAATGGAT 1932
Query 53213 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 53259
|| ||||| || ||||| || || || || || || |||||||||||
Sbjct 1933 TCGTTATTCCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGC 1979
>seq10678
Length=68604
Score = 100 bits (110), Expect = 3e-16
Identities = 78/93 (84%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692
|||||||| | |||||||| ||||| | |||||||||||||||| |||||| ||| ||
Sbjct 44964 ACTTCTTCTATAGTCCAAAACGATGCTACAGCCTTTTTATACATATCCCAGATATCAGGA 44905
Query 24693 TATTGAATTGGAAAAATAACAAATCTATTTGGA 24725
|||||||| |||||||| || || | |||||||
Sbjct 44904 TATTGAATAGGAAAAATTACGAAACGATTTGGA 44872
Score = 96.9 bits (106), Expect = 4e-15
Identities = 164/235 (70%), Gaps = 7/235 (3%)
Strand=Plus/Minus
Query 24384 TTTTCATTACTATCTTTAACATATGTATCAATCA--AAAGACTATACATTTCCGAATGAA 24441
||||| || ||| ||| ||| || ||||| | ||||| ||||||||| |||||||
Sbjct 45511 TTTTCTTTTGGATCGGTAATATAAGTTTCAATGAGCAAAGA--ATACATTTCGGAATGAA 45454
Query 24442 TGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTA 24501
| || || ||||||||||| || ||||||||||| | || || | | | || ||
Sbjct 45453 TATTCTCTATGGCCATTTGGAAGCCGTAGAAACAACGTGCTTCAGCGACTTTCACCTCCT 45394
Query 24502 TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 24561
|| |||| ||| | ||| || || || || || ||| || || ||||| ||||
Sbjct 45393 GACTGAATCTTTCAATCAGATTCTCGTTAACAATACCATCAGAAGCGGCGAAAAATGCCA 45334
Query 24562 ATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT---ATTCCAATCATT 24613
| ||||| ||||| ||| ||||||| | ||||||| || |||||| ||
Sbjct 45333 AGACATGAGAGATAAAGTATCTTTCGTCGGAACTTAGTTTTTCATCCCAATCCTT 45279
>seq5599
Length=16320
Score = 95.1 bits (104), Expect = 1e-14
Identities = 107/141 (76%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827
||||||| | || |||||||| ||||| ||||| |||| ||| |||||||| ||||
Sbjct 13214 CACTAAAGACCTTCTTTGTTTCCTTGTGCAGATTGGATATGGCAATTCTAGCTGCTAAGG 13155
Query 54828 TGGCATAATCCGGATGTTGTGTAGTACA-AGTGGCTGCTATTTCGGCTGTCAGAGTGTCC 54886
| || ||||| ||||| || || | || ||| || || |||| |||| || | | |||
Sbjct 13154 TTGCGTAATCTGGATGCTG-GTTGATCATAGTTGCCGCAGTTTCAGCTGCCAAATTATCC 13096
Query 54887 AATTCTACCGTTGTTACTCCA 54907
||||| | ||||||||||||
Sbjct 13095 AATTCGATAGTTGTTACTCCA 13075
Score = 82.4 bits (90), Expect = 9e-11
Identities = 120/170 (71%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 53384 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 53443
||| |||||| || || || |||| | |||||| ||| ||||| || |||| |||
Sbjct 14997 CCTTCATATGACTCATAAGGACCTTTTTGGGCAGCTATTTCGCAACTAGCTTCTAGAGCA 14938
Query 53444 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 53503
|| ||||||| || || || || | || || | | || || |||| ||||||
Sbjct 14937 CCATAATAAAGAGTCTCAAAAATTTGGACGTTGAGTTTATTAGCCTCTTGGCTTTCAAAT 14878
Query 53504 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 53553
||||| | | | || ||||| |||||||| ||||| |||||||||||
Sbjct 14877 GGATATCTCATTAAGATGAACGCATCTGCTAACCCTTGTACACCAATACC 14828
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593631532433280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |