Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq2842 174 2e-38 >seq2842 Length=3006 Score = 174 bits (192), Expect = 2e-38 Identities = 216/293 (74%), Gaps = 2/293 (1%) Strand=Plus/Minus Query 145688 GCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTC-CCCGGGC 145746 |||| | |||||| ||| | ||||||||| ||||| || | |||||| ||| || Sbjct 1936 GCTCGAAGTGGTTCGAGTACAGGTGCGCGTCACCCAGCGTATGCACGAAGTCGCCCACGC 1877 Query 145747 TCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAG 145806 | ||||| ||| || || ||||||| ||||||||| | ||||||||| |||||||| Sbjct 1876 CC-AGGCCGGTGGCCTGCGCCACCATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAAC 1818 Query 145807 GGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCC 145866 ||||| || || ||||| || ||||||||||||||||||| ||||| ||| || Sbjct 1817 GGCACACCGAGGAAGATGTCACCGCTGCGCTGGTACAGCTGGCAGCTGAGCTTGCCGTCC 1758 Query 145867 GCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCC 145926 |||||||||||||| ||||| |||||| ||| ||| ||||| | || || || Sbjct 1757 ACCACGTAGAACTGGAACAGGTTGTGGCACGGCATCAGCGCCATCTGCGAAAGCTCGCCC 1698 Query 145927 GGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTC 145979 |||||||||| ||| || |||| | |||||||| | ||||||||| Sbjct 1697 ACGTTCCAGGCGCTGACCACCAGCCGGCGCGAATCGGGGTTGCGCTTGATCTC 1645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589987285349440