Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq9876 102 7e-17 seq7200 84.2 2e-11 >seq9876 Length=23795 Score = 102 bits (112), Expect = 7e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 25148 AGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGA 25207 |||||| |||||| | |||||||| ||||| |||||||||||| || || || | || Sbjct 12842 AGATCAGCAAAGATTGATCTTTGCTGGCAAGCAATTGGAAGATGGCAGGACATTGTCGGA 12901 Query 25208 TTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| |||||||||||||||||| | || ||||||| || || ||||| || Sbjct 12902 CTACAACATTCAAAAGGAATCTACTTTACATTTGGTGTTGCGCTTGCGAGGCGG 12955 >seq7200 Length=105881 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | ||||||||||| || || |||||||| ||| || | | Sbjct 105597 ATGCAAATTTTCGTTAAAACATTGACTGGAAAGACCATTACATTGGAAGTTGAGGCATCG 105656 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | || |||| |||||| ||||| ||||| | || ||||||| Sbjct 105657 GACACGATCGAAAATGTCAAAGCCAAAATTCAGGATAAGGAAGGAATCCCTCCAGATCAA 105716 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACA 25212 || || | |||||||| || ||||| |||||||| || | ||| | | || |||| Sbjct 105717 CAGAGGTTAATCTTTGCCGGAAAACAGCTGGAAGATGGTCGTACACTTT--CTGACTACA 105774 Query 25213 ATATTCAAAAGGAATCTAC 25231 ||||||| || ||||| || Sbjct 105775 ATATTCAGAAAGAATCAAC 105793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410736040072304