Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq7200 113 5e-20
seq6771 113 5e-20
seq10678 104 2e-17
seq9711 104 2e-17
>seq7200
Length=105881
Score = 113 bits (124), Expect = 5e-20
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
|||||| || || || ||||| ||||| || ||||||||||| | || ||||| || |
Sbjct 105140 AATGCAGATTTTTGTCAAAACTCTCACAGGAAAAACCATCACATTGGAAGTCGAGGCTTC 105199
Query 40749 CGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
|||| | | ||||| |||| | |||||||| || || || || || || |||| |
Sbjct 105200 GGACACGATCGAAAACG-TCAAAGCAAAAATTCAAGATAAGGAAGGAATTCCTCCGGATC 105258
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
||||| || | |||| || |||||||| || || |||| ||||| || || ||||
Sbjct 105259 AGCAAAGATTGATCTTTGCTGGCAAACAACTTGAGGACGGTCGCACACTTTCTGATTACA 105318
Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||| || || || | ||| ||||| |||| | || ||| | || ||
Sbjct 105319 ACATTCAAAAAGAATCAACGTTGCATTTAGTTCTCCGATTGCGTGGTGG 105367
>seq6771
Length=7421
Score = 113 bits (124), Expect = 5e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||||||||| ||||| || ||||| |||||| |||| || ||||| |
Sbjct 95 ATGCAGATCTTCGTAAAAACTCTCACTGGTAAAACTATCACCCTCGAAGTTGAAGCTTCA 154
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | |||| | || || | |||||||| ||||| || | || |||
Sbjct 155 GACACTATAGAGAATGTCAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCAGATCAG 214
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || || | || |||||||| || || || | | || || |||||| |||
Sbjct 215 CAGCGTCTAATTTTTGCTGGCAAACAACTTGAAGATGGCAGAACTCTTTCCGACTATAAC 274
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||||||||||| | ||||| ||||| || ||||
Sbjct 275 ATCCAGAAGGAATCTACGCTTCATCTGGTTCTGCG 309
Score = 107 bits (118), Expect = 2e-18
Identities = 155/216 (72%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||||||||| ||||| || ||||| |||||| | || || ||||| |
Sbjct 323 ATGCAGATCTTCGTAAAAACTCTCACCGGTAAAACTATCACCCTTGAAGTTGAAGCTTCG 382
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | |||| | || | ||||| | ||||||||||| || ||| |||| ||
Sbjct 383 GATACTATAGAGAACG-TGAAAGCTAAAATCCAGGACAAAGAGGGAATTCCCCCGGATCA 441
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|| || || || | ||| ||||||||||| || || | | || || || |||||
Sbjct 442 ACAGCGTCTAATTTTCGCTGGCAAACAGCTTGAAGATGGCAGGACTCTTTCAGATTACAA 501
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|||||| ||||| | || || || |||| |||||
Sbjct 502 CATCCAAAAGGAATCAACACTCCACTTAGTTTTGCG 537
>seq10678
Length=68604
Score = 104 bits (114), Expect = 2e-17
Identities = 117/157 (75%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 116760 TGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTC 116819
|||| ||||||||||| || || || || |||||||||||| | || | ||| ||
Sbjct 45334 TGGCATTTTTCGCCGCTTCTGATGGTATTGTTAACGAGAATCTGATTGAAAGATTCAGTC 45393
Query 116820 AGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACG 116879
|||||||| | || || || || || || ||||||||||| || || ||||| |||||
Sbjct 45394 AGGAGGTGAAAGTCGCTGAAGCACGTTGTTTCTACGGCTTCCAAATGGCCATAGAGAATA 45453
Query 116880 TGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916
| || || ||||||||||| ||||| || || ||
Sbjct 45454 TTCATTCCGAAATGTATTCTTTGCTCATTGAAACTTA 45490
Score = 102 bits (112), Expect = 8e-17
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 117047 GCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTC 117106
|| |||||||| |||||||| | ||||| |||||||| || || |||||||||||
Sbjct 45811 GCATTCGCGGCAGTCGAGGGTATTTTCTTCAGCGGCAGTTTTGCAGCGATATTTTGGCTG 45870
Query 117107 AAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGA 117165
|| ||||| || ||||||| || || ||||| |||||||| |||||||| |||| ||
Sbjct 45871 AAAAAACGAGGAGTCATGCCAGGTCTTACTTTTAGCAACGAACTCATCTCGCGGGATGA 45929
>seq9711
Length=151070
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || ||||| ||||| ||||||||||| || | || || ||||| |
Sbjct 103792 ATGCAGATTTTTGTTAAAACTCTCACTGGCAAAACCATTACATTGGAGGTTGAAGCTTCG 103851
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | ||| |||| | ||||||| || || || || ||||| |||| |||
Sbjct 103852 GACACAATTGAAAATGTCAAAGCCAAAATTCAAGATAAGGAAGGAATCCCTCCGGATCAG 103911
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || | |||| ||| || ||||| ||||| || | || || || ||||||||||
Sbjct 103912 CAGAGATTAATCTTCGCTGGAAAACAACTGGAAGATGGCCGTACACTTTCCGACTACAAC 103971
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|| ||||| || | || ||||| | || | || ||| | || ||
Sbjct 103972 ATTCAGAAAGAATCGACCTTGCATTTGGTTCTCCGTTTGCGTGGTGG 104018
Score = 96.9 bits (106), Expect = 4e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| ||||| || || || | || |||||||| || || | || ||||| || |
Sbjct 104248 ATGCAGATATTTGTCAAGACTTTAACTGGCAAAACTATAACACTAGAGGTCGAGGCTTCG 104307
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| | |||| ||||||| |||||||||||||| || | || ||
Sbjct 104308 GACACAATCGAGAACG-TGAAGGCGAAAATTCAAGACAAAGAGGGCATTCCTCCCGATCA 104366
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|||| |||| || | ||| |||||||| || || |||| || || | |||||||||
Sbjct 104367 GCAAAGACTGATTTTCGCTGGCAAACAACTCGAGGACGGACGAACTTTGTCCGACTACAA 104426
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|| || || || |||| || || || ||
Sbjct 104427 TATTCAAAAAGAATCCACACTCCACCTTGT 104456
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515141041247360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |