Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq7200 113 5e-20 seq6771 113 5e-20 seq10678 104 2e-17 seq9711 104 2e-17 >seq7200 Length=105881 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || ||||| ||||| || ||||||||||| | || ||||| || | Sbjct 105140 AATGCAGATTTTTGTCAAAACTCTCACAGGAAAAACCATCACATTGGAAGTCGAGGCTTC 105199 Query 40749 CGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | ||||| |||| | |||||||| || || || || || || |||| | Sbjct 105200 GGACACGATCGAAAACG-TCAAAGCAAAAATTCAAGATAAGGAAGGAATTCCTCCGGATC 105258 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||| || | |||| || |||||||| || || |||| ||||| || || |||| Sbjct 105259 AGCAAAGATTGATCTTTGCTGGCAAACAACTTGAGGACGGTCGCACACTTTCTGATTACA 105318 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||| || || || | ||| ||||| |||| | || ||| | || || Sbjct 105319 ACATTCAAAAAGAATCAACGTTGCATTTAGTTCTCCGATTGCGTGGTGG 105367 >seq6771 Length=7421 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||||||||| ||||| || ||||| |||||| |||| || ||||| | Sbjct 95 ATGCAGATCTTCGTAAAAACTCTCACTGGTAAAACTATCACCCTCGAAGTTGAAGCTTCA 154 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||| | || || | |||||||| ||||| || | || ||| Sbjct 155 GACACTATAGAGAATGTCAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCAGATCAG 214 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | || |||||||| || || || | | || || |||||| ||| Sbjct 215 CAGCGTCTAATTTTTGCTGGCAAACAACTTGAAGATGGCAGAACTCTTTCCGACTATAAC 274 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||| | ||||| ||||| || |||| Sbjct 275 ATCCAGAAGGAATCTACGCTTCATCTGGTTCTGCG 309 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||||||||| ||||| || ||||| |||||| | || || ||||| | Sbjct 323 ATGCAGATCTTCGTAAAAACTCTCACCGGTAAAACTATCACCCTTGAAGTTGAAGCTTCG 382 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| | || | ||||| | ||||||||||| || ||| |||| || Sbjct 383 GATACTATAGAGAACG-TGAAAGCTAAAATCCAGGACAAAGAGGGAATTCCCCCGGATCA 441 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || || | ||| ||||||||||| || || | | || || || ||||| Sbjct 442 ACAGCGTCTAATTTTCGCTGGCAAACAGCTTGAAGATGGCAGGACTCTTTCAGATTACAA 501 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||| ||||| | || || || |||| ||||| Sbjct 502 CATCCAAAAGGAATCAACACTCCACTTAGTTTTGCG 537 >seq10678 Length=68604 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 116760 TGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTC 116819 |||| ||||||||||| || || || || |||||||||||| | || | ||| || Sbjct 45334 TGGCATTTTTCGCCGCTTCTGATGGTATTGTTAACGAGAATCTGATTGAAAGATTCAGTC 45393 Query 116820 AGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACG 116879 |||||||| | || || || || || || ||||||||||| || || ||||| ||||| Sbjct 45394 AGGAGGTGAAAGTCGCTGAAGCACGTTGTTTCTACGGCTTCCAAATGGCCATAGAGAATA 45453 Query 116880 TGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916 | || || ||||||||||| ||||| || || || Sbjct 45454 TTCATTCCGAAATGTATTCTTTGCTCATTGAAACTTA 45490 Score = 102 bits (112), Expect = 8e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 117047 GCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTC 117106 || |||||||| |||||||| | ||||| |||||||| || || ||||||||||| Sbjct 45811 GCATTCGCGGCAGTCGAGGGTATTTTCTTCAGCGGCAGTTTTGCAGCGATATTTTGGCTG 45870 Query 117107 AAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGA 117165 || ||||| || ||||||| || || ||||| |||||||| |||||||| |||| || Sbjct 45871 AAAAAACGAGGAGTCATGCCAGGTCTTACTTTTAGCAACGAACTCATCTCGCGGGATGA 45929 >seq9711 Length=151070 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| ||||| ||||||||||| || | || || ||||| | Sbjct 103792 ATGCAGATTTTTGTTAAAACTCTCACTGGCAAAACCATTACATTGGAGGTTGAAGCTTCG 103851 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| |||| | ||||||| || || || || ||||| |||| ||| Sbjct 103852 GACACAATTGAAAATGTCAAAGCCAAAATTCAAGATAAGGAAGGAATCCCTCCGGATCAG 103911 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| ||| || ||||| ||||| || | || || || |||||||||| Sbjct 103912 CAGAGATTAATCTTCGCTGGAAAACAACTGGAAGATGGCCGTACACTTTCCGACTACAAC 103971 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || ||||| || | || ||||| | || | || ||| | || || Sbjct 103972 ATTCAGAAAGAATCGACCTTGCATTTGGTTCTCCGTTTGCGTGGTGG 104018 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| ||||| || || || | || |||||||| || || | || ||||| || | Sbjct 104248 ATGCAGATATTTGTCAAGACTTTAACTGGCAAAACTATAACACTAGAGGTCGAGGCTTCG 104307 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| ||||||| |||||||||||||| || | || || Sbjct 104308 GACACAATCGAGAACG-TGAAGGCGAAAATTCAAGACAAAGAGGGCATTCCTCCCGATCA 104366 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| |||| || | ||| |||||||| || || |||| || || | ||||||||| Sbjct 104367 GCAAAGACTGATTTTCGCTGGCAAACAACTCGAGGACGGACGAACTTTGTCCGACTACAA 104426 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || || || || |||| || || || || Sbjct 104427 TATTCAAAAAGAATCCACACTCCACCTTGT 104456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515141041247360