Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq7200 168 1e-36
seq9711 141 1e-28
>seq7200
Length=105881
Score = 168 bits (186), Expect = 1e-36
Identities = 176/231 (76%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
|||||| || ||| | || || || || || || || || ||| | ||| | || ||
Sbjct 104912 AATGCAGATTTTTGTTAAAACCCTGACTGGAAAGACCATCACTTTGGAGGTAGAGGCTTC 104971
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|||||| ||| ||| | ||| ||||||||||||||||||||| || ||||| |||||
Sbjct 104972 TGATACGATTGAGAATGTCAAAGCGAAAATTCAAGATAAAGAAGGCATCCCACCAGATCA 105031
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| || | || ||||| ||||| ||| | |||||| |||| || | |||||||||
Sbjct 105032 GCAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGTCGTACTCTCTCAGATTATAA 105091
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
||||||||| |||||||| |||||||||||| | ||||| || ||||| ||
Sbjct 105092 TATTCAAAAGGAATCAACCTTGCATTTGGTTCTTCGTTTGCGTGGTGGAAT 105142
Score = 138 bits (152), Expect = 2e-27
Identities = 188/260 (72%), Gaps = 3/260 (1%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| ||| | || ||| | || || || || || || | ||| |||||||
Sbjct 105369 ATGCAAATTTTTGTTAAAACATTGACGGGAAAGACCATCACATTGGAGGTTGAAGCGTCA 105428
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || || || | ||| |||||||| ||||| ||||| || ||||| |||||
Sbjct 105429 GACACGATCGAGAACGTCAAAGCCAAAATTCAGGATAAGGAAGGAATCCCACCGGATCAG 105488
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| ||| | || || || ||||| || ||||||| | || || | |||||||||
Sbjct 105489 CAGAGGTTGATCTTCGCCGGAAAGCAGCTAGAGGACGGCCGCACGCTTTCAGATTATAAC 105548
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTC 124777
||||||||||||||||| |||||||| ||| | ||||| || |||||||| ||| |||
Sbjct 105549 ATTCAAAAAGAATCAACGTTGCATTTAGTTCTCCGTTTGCGTGGTGGTATGCAAATTTTC 105608
Query 124778 AT--AAAAATTGATTGTAAA 124795
| ||| ||||| || |||
Sbjct 105609 GTTAAAACATTGACTGGAAA 105628
Score = 138 bits (152), Expect = 2e-27
Identities = 188/260 (72%), Gaps = 3/260 (1%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| || | || ||| | || || || || || || | || |||| |||
Sbjct 105597 ATGCAAATTTTCGTTAAAACATTGACTGGAAAGACCATTACATTGGAAGTTGAGGCATCG 105656
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || || ||| | ||| |||||||| ||||| ||||| || || || ||||||
Sbjct 105657 GACACGATCGAAAATGTCAAAGCCAAAATTCAGGATAAGGAAGGAATCCCTCCAGATCAA 105716
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| ||| | || ||||| |||||||| | || ||| |||| ||| | || || |||
Sbjct 105717 CAGAGGTTAATCTTTGCCGGAAAACAGCTGGAAGATGGTCGTACACTTTCTGACTACAAT 105776
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTC 124777
||||| ||||||||||| |||||||||||| | ||||| || |||||||| ||| |||
Sbjct 105777 ATTCAGAAAGAATCAACCTTGCATTTGGTTCTCCGTTTGCGTGGTGGTATGCAAATTTTC 105836
Query 124778 AT--AAAAATTGATTGTAAA 124795
| ||| ||||| || |||
Sbjct 105837 GTTAAAACATTGACTGGAAA 105856
Score = 129 bits (142), Expect = 9e-25
Identities = 172/239 (72%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
|||||| || ||| | || || || ||||| ||||| || || | || | || ||
Sbjct 105140 AATGCAGATTTTTGTCAAAACTCTCACAGGAAAAACCATCACATTGGAAGTCGAGGCTTC 105199
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|| || || || | ||| |||||||||||||| ||||| || || || |||||
Sbjct 105200 GGACACGATCGAAAACGTCAAAGCAAAAATTCAAGATAAGGAAGGAATTCCTCCGGATCA 105259
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
||||| | || ||||| || |||||| | ||||| |||| ||| | ||||| ||
Sbjct 105260 GCAAAGATTGATCTTTGCTGGCAAACAACTTGAGGACGGTCGCACACTTTCTGATTACAA 105319
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776
||||||||||||||||| |||||||| ||| | || || || |||||||| ||| ||
Sbjct 105320 CATTCAAAAAGAATCAACGTTGCATTTAGTTCTCCGATTGCGTGGTGGTATGCAAATTT 105378
>seq9711
Length=151070
Score = 141 bits (156), Expect = 1e-28
Identities = 174/238 (73%), Gaps = 0/238 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | || || || || |||||||| || || | ||| |||||||
Sbjct 103792 ATGCAGATTTTTGTTAAAACTCTCACTGGCAAAACCATTACATTGGAGGTTGAAGCTTCG 103851
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| |||||| ||| | ||| |||||||||||||| ||||| || || || |||||
Sbjct 103852 GACACAATTGAAAATGTCAAAGCCAAAATTCAAGATAAGGAAGGAATCCCTCCGGATCAG 103911
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| || | || || || ||||||||| | || ||| | || ||| | || || ||
Sbjct 103912 CAGAGATTAATCTTCGCTGGAAAACAACTGGAAGATGGCCGTACACTTTCCGACTACAAC 103971
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776
||||| |||||||| || |||||||||||| | ||||| || |||||||| ||| ||
Sbjct 103972 ATTCAGAAAGAATCGACCTTGCATTTGGTTCTCCGTTTGCGTGGTGGTATGCAAATTT 104029
Score = 125 bits (138), Expect = 1e-23
Identities = 146/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| |||||| | ||||| |||| |||||||||||||| ||||| | || ||
Sbjct 104248 ATGCAGATATTTGTCAAGACTTTAACTGGCAAAACTATAACACTAGAGGTCGAGGCTTCG 104307
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| ||||| || | || |||||||||||| ||||| || || || || |||||
Sbjct 104308 GACACAATCGAGAACGTGAAGGCGAAAATTCAAGACAAAGAGGGCATTCCTCCCGATCAG 104367
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||||| || ||||| || || |||||| | ||||| | ||||| || || || |||
Sbjct 104368 CAAAGACTGATTTTCGCTGGCAAACAACTCGAGGACGGACGAACTTTGTCCGACTACAAT 104427
Query 124719 ATTCAAAAAGAATCAAC 124735
|||||||||||||| ||
Sbjct 104428 ATTCAAAAAGAATCCAC 104444
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755341397324800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |