Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq9711 138 1e-27 seq6771 132 4e-26 seq7200 129 5e-25 seq10900 111 1e-19 >seq9711 Length=151070 Score = 138 bits (152), Expect = 1e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| ||| || ||||||||||| ||||| ||| || ||| || |||||||| || Sbjct 104451 GTGGAGTGTGGATTCTTTTTGAATATTGTAGTCGGACAAAGTTCGTCCGTCCTCGAGTTG 104392 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||| |||||| | || || | |||||||||||||| |||||||| |||||| |||||| Sbjct 104391 TTTGCCAGCGAAAATCAGTCTTTGCTGATCGGGAGGAATGCCCTCTTTGTCTTGAATTTT 104332 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| ||||||| ||||||||| | || | |||||||| || Sbjct 104331 CGCCTTCACGTTCTCGATTGTGTCCGAAGCCTCGACCTCTAGTGTTATAGTTTTGCCAGT 104272 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 | ||| || ||||| |||||||| Sbjct 104271 TAAAGTCTTGACAAATATCTGCAT 104248 Score = 129 bits (142), Expect = 5e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || || ||||| ||||||||||| ||| | || || ||| || Sbjct 104000 ACCAAATGCAAGGTCGATTCTTTCTGAATGTTGTAGTCGGAAAGTGTACGGCCATCTTCC 103941 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || |||||||||||| |||| | | ||||||||| ||||| || || ||||| ||| | Sbjct 103940 AGTTGTTTTCCAGCGAAGATTAATCTCTGCTGATCCGGAGGGATTCCTTCCTTATCTTGA 103881 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGT-GCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | ||| | ||||||| ||| || ||||| | || | ||||| Sbjct 103880 ATTTTGGCTTTGACATTTTCAATTGTGTCCGAAGCT-TCAACCTCCAATGTAATGGTTTT 103822 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || |||||||| |||||||||||||| Sbjct 103821 GCCAGTGAGAGTTTTAACAAAAATCTGCAT 103792 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/138 (74%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | ||||| ||||| || | ||||||||||| ||||||||||| || Sbjct 103792 TACCACCACGAAGCCTCAAGACCAAATGTAACGTAGACTCTTTCTGAATGTTGTAGTC-- 103735 Query 118570 TCATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGG 118627 | | |||| || ||| || ||||||||||| || |||| | | ||| ||||| || Sbjct 103734 TGAAAGTGTACGACCATCTTCCAGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGG 103675 Query 118628 AGGTATGCCCTCCTTGTC 118645 ||| || || ||||| || Sbjct 103674 AGGGATTCCTTCCTTATC 103657 >seq6771 Length=7421 Score = 132 bits (146), Expect = 4e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | || ||| || ||||||| ||| || || ||||| ||||||||||| Sbjct 549 CCTCCGCGAAGTCGCAAAACTAAGTGGAGTGTTGATTCCTTTTGGATGTTGTAATCTGAA 490 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| | ||| || |||||||| |||||| | || |||||||| ||||| || || Sbjct 489 AGAGTCCTGCCATCTTCAAGCTGTTTGCCAGCGAAAATTAGACGCTGTTGATCCGGGGGA 430 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGT-GCTCTCGAC 118690 || ||||| ||||| ||||| ||| || | || | || |||| ||| || || Sbjct 429 ATTCCCTCTTTGTCCTGGATTTTAGCTTTCACGTTCTCTATAGTATCCGAAGCT-TCAAC 371 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || | ||| | ||||| ||||| ||||||||||| || ||||||||| || Sbjct 370 TTCAAGGGTGATAGTTTTACCGGTGAGAGTTTTTACGAAGATCTGCATGCCT 319 Score = 105 bits (116), Expect = 6e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | | || |||| || | ||||| || || || ||||| || ||| Sbjct 321 CCTCCGCGAAGACGCAGAACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCGGAA 262 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| | ||| || || ||||| ||||| | || |||||||||||||| ||||| Sbjct 261 AGAGTTCTGCCATCTTCAAGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGAGGA 202 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGT-GCTCTCGAC 118690 ||||| || |||||| || || ||| || | || | ||||| | ||| || || Sbjct 201 ATGCCTTCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATAGTGTCTGAAGCT-TCAAC 143 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 |||| ||| | ||||| || || ||||||||||| || ||||||||| || Sbjct 142 TTCGAGGGTGATAGTTTTACCAGTGAGAGTTTTTACGAAGATCTGCATGCCT 91 >seq7200 Length=105881 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || |||| | || || || | || || |||||||||||||||||||| Sbjct 105369 TACCACCACGCAATCGGAGAACTAAATGCAACGTTGATTCTTTTTGAATGTTGTAATCAG 105310 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||||| ||||| || ||||| ||||| |||| | | |||||||| |||| Sbjct 105309 AAAGTGTGCGACCGTCCTCAAGTTGTTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAG 105250 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || ||||| ||| ||||||| ||| || | ||||| ||||||| ||||| Sbjct 105249 GAATTCCTTCCTTATCTTGAATTTTTGCTTTGACGTTTTCGATCGTGTCCGAAGCCTCGA 105190 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | ||||| || || |||||||| |||||||||||||| Sbjct 105189 CTTCCAATGTGATGGTTTTTCCTGTGAGAGTTTTGACAAAAATCTGCAT 105141 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || ||||||| | |||||||| | || || || ||||| || ||||| || | Sbjct 104911 CCGCCACGTAATCGAAGAACCAAGTGAAGAGTCGATTCCTTTTGGATATTGTAGTCAGAC 104852 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || || || |||||||||||||| |||| | ||||||||| || || || Sbjct 104851 AAGGTACGTCCGTCTTCAAGCTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCAGGTGGG 104792 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||| || ||||| ||| ||| ||| || | |||| ||||| | ||| ||| Sbjct 104791 ATGCCTTCTTTGTCCTGAATCTTTGCTTTCACGTTCTCGATAGTGTCAGAAGCCTCAACC 104732 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | || || || |||| || || || ||||||||||| Sbjct 104731 TCAAGAGTTATGGTCTTTCCAGTCAACGTCTTCACGAAAATCTGCAT 104685 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || || || |||||||| || ||||| | ||| || |||||| Sbjct 105121 ACCAAATGCAAGGTTGATTCCTTTTGAATATTATAATCTGAGAGAGTACGACCATCCTCA 105062 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || |||||||| |||| | | ||||||||| || || ||||| || || ||| | Sbjct 105061 AGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATGCCTTCTTTATCTTGA 105002 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| ||| || | || | || || | ||| ||||| | || | || || Sbjct 105001 ATTTTCGCTTTGACATTCTCAATCGTATCAGAAGCCTCTACCTCCAAAGTGATGGTCTTT 104942 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| ||||| |||||||||||||| Sbjct 104941 CCAGTCAGGGTTTTAACAAAAATCTGCAT 104913 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || |||||||||||||| ||||| | ||||| ||||| ||||| ||||| Sbjct 105565 GTTGATTCTTTTTGAATGTTATAATCTGAAAGCGTGCGGCCGTCCTCTAGCTGCTTTCCG 105506 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | | ||||||||| || || || || ||||| || |||||| ||| Sbjct 105505 GCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCTTCCTTATCCTGAATTTTGGCTTTG 105446 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | |||| ||||| | ||| || ||||| | || | || || || |||| || Sbjct 105445 ACGTTCTCGATCGTGTCTGACGCT-TCAACCTCCAATGTGATGGTCTTTCCCGTCAATGT 105387 Query 118721 TTTTACAAAAATCTGCAT 118738 ||| |||||||| ||||| Sbjct 105386 TTTAACAAAAATTTGCAT 105369 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || || ||||| ||||| ||||| || | || || ||| || Sbjct 105805 ACCAAATGCAAGGTTGATTCTTTCTGAATATTGTAGTCAGAAAGTGTACGACCATCTTCC 105746 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||||||||| || |||| | | ||| ||||| ||||| || || ||||| || | Sbjct 105745 AGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGAGGGATTCCTTCCTTATCCTGA 105686 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | ||||| ||||||| ||| ||| || || | || | || || Sbjct 105685 ATTTTGGCTTTGACATTTTCGATCGTGTCCGATGC-CTCAACTTCCAATGTAATGGTCTT 105627 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||||| || ||||| ||||| Sbjct 105626 TCCAGTCAATGTTTTAACGAAAATTTGCAT 105597 >seq10900 Length=227893 Score = 111 bits (122), Expect = 1e-19 Identities = 142/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTA 118606 |||||||||||||||||| || | || | |||| |||||| || ||||| |||||| | Sbjct 197226 CTTTTTGAATGTTGTAAT--CTGAAAGGGTGCGTCCATCCTCTAGTTGTTTGCCAGCGAA 197283 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 |||||| | ||||||||| || || || || ||||| || ||| || || || | Sbjct 197284 GATGAGTCTCTGCTGATCCGGTGGAATTCCTTCCTTATCCTGAATCTTAGCCTTGACGTT 197343 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 |||| ||| || | | ||| ||||||| ||| | || || || || || || || || Sbjct 197344 CTCGATGGTATCAGAGGCCTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCAC 197403 Query 118727 AAAAATCTGCATGG 118740 || |||||||||| Sbjct 197404 GAAGATCTGCATGG 197417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433766233230112