Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq9711 138 1e-27
seq6771 132 4e-26
seq7200 129 5e-25
seq10900 111 1e-19
>seq9711
Length=151070
Score = 138 bits (152), Expect = 1e-27
Identities = 153/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594
||||| ||| || ||||||||||| ||||| ||| || ||| || |||||||| ||
Sbjct 104451 GTGGAGTGTGGATTCTTTTTGAATATTGTAGTCGGACAAAGTTCGTCCGTCCTCGAGTTG 104392
Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654
||| |||||| | || || | |||||||||||||| |||||||| |||||| ||||||
Sbjct 104391 TTTGCCAGCGAAAATCAGTCTTTGCTGATCGGGAGGAATGCCCTCTTTGTCTTGAATTTT 104332
Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714
|| || | |||| ||||||| ||||||||| | || | |||||||| ||
Sbjct 104331 CGCCTTCACGTTCTCGATTGTGTCCGAAGCCTCGACCTCTAGTGTTATAGTTTTGCCAGT 104272
Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738
| ||| || ||||| ||||||||
Sbjct 104271 TAAAGTCTTGACAAATATCTGCAT 104248
Score = 129 bits (142), Expect = 5e-25
Identities = 156/210 (74%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
||||| || | || || ||||| ||||||||||| ||| | || || ||| ||
Sbjct 104000 ACCAAATGCAAGGTCGATTCTTTCTGAATGTTGTAGTCGGAAAGTGTACGGCCATCTTCC 103941
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
|| |||||||||||| |||| | | ||||||||| ||||| || || ||||| ||| |
Sbjct 103940 AGTTGTTTTCCAGCGAAGATTAATCTCTGCTGATCCGGAGGGATTCCTTCCTTATCTTGA 103881
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGT-GCTCTCGACCTCGACGGTCACCGTTTT 118708
||||| ||| || | ||| | ||||||| ||| || ||||| | || | |||||
Sbjct 103880 ATTTTGGCTTTGACATTTTCAATTGTGTCCGAAGCT-TCAACCTCCAATGTAATGGTTTT 103822
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||| || |||||||| ||||||||||||||
Sbjct 103821 GCCAGTGAGAGTTTTAACAAAAATCTGCAT 103792
Score = 82.4 bits (90), Expect = 7e-11
Identities = 102/138 (74%), Gaps = 4/138 (3%)
Strand=Plus/Minus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || || | ||||| ||||| || | ||||||||||| ||||||||||| ||
Sbjct 103792 TACCACCACGAAGCCTCAAGACCAAATGTAACGTAGACTCTTTCTGAATGTTGTAGTC-- 103735
Query 118570 TCATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGG 118627
| | |||| || ||| || ||||||||||| || |||| | | ||| ||||| ||
Sbjct 103734 TGAAAGTGTACGACCATCTTCCAGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGG 103675
Query 118628 AGGTATGCCCTCCTTGTC 118645
||| || || ||||| ||
Sbjct 103674 AGGGATTCCTTCCTTATC 103657
>seq6771
Length=7421
Score = 132 bits (146), Expect = 4e-26
Identities = 170/232 (73%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571
|||||||| | || ||| || ||||||| ||| || || ||||| |||||||||||
Sbjct 549 CCTCCGCGAAGTCGCAAAACTAAGTGGAGTGTTGATTCCTTTTGGATGTTGTAATCTGAA 490
Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631
| ||| | ||| || |||||||| |||||| | || |||||||| ||||| || ||
Sbjct 489 AGAGTCCTGCCATCTTCAAGCTGTTTGCCAGCGAAAATTAGACGCTGTTGATCCGGGGGA 430
Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGT-GCTCTCGAC 118690
|| ||||| ||||| ||||| ||| || | || | || |||| ||| || ||
Sbjct 429 ATTCCCTCTTTGTCCTGGATTTTAGCTTTCACGTTCTCTATAGTATCCGAAGCT-TCAAC 371
Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742
|| | ||| | ||||| ||||| ||||||||||| || ||||||||| ||
Sbjct 370 TTCAAGGGTGATAGTTTTACCGGTGAGAGTTTTTACGAAGATCTGCATGCCT 319
Score = 105 bits (116), Expect = 6e-18
Identities = 164/232 (71%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571
|||||||| | | || |||| || | ||||| || || || ||||| || |||
Sbjct 321 CCTCCGCGAAGACGCAGAACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCGGAA 262
Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631
| ||| | ||| || || ||||| ||||| | || |||||||||||||| |||||
Sbjct 261 AGAGTTCTGCCATCTTCAAGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGAGGA 202
Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGT-GCTCTCGAC 118690
||||| || |||||| || || ||| || | || | ||||| | ||| || ||
Sbjct 201 ATGCCTTCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATAGTGTCTGAAGCT-TCAAC 143
Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742
|||| ||| | ||||| || || ||||||||||| || ||||||||| ||
Sbjct 142 TTCGAGGGTGATAGTTTTACCAGTGAGAGTTTTTACGAAGATCTGCATGCCT 91
>seq7200
Length=105881
Score = 129 bits (142), Expect = 5e-25
Identities = 166/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || || |||| | || || || | || || ||||||||||||||||||||
Sbjct 105369 TACCACCACGCAATCGGAGAACTAAATGCAACGTTGATTCTTTTTGAATGTTGTAATCAG 105310
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
| ||||| ||||| || ||||| ||||| |||| | | |||||||| ||||
Sbjct 105309 AAAGTGTGCGACCGTCCTCAAGTTGTTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAG 105250
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| || || ||||| ||| ||||||| ||| || | ||||| ||||||| |||||
Sbjct 105249 GAATTCCTTCCTTATCTTGAATTTTTGCTTTGACGTTTTCGATCGTGTCCGAAGCCTCGA 105190
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
| || | || | ||||| || || |||||||| ||||||||||||||
Sbjct 105189 CTTCCAATGTGATGGTTTTTCCTGTGAGAGTTTTGACAAAAATCTGCAT 105141
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571
|| || ||||||| | |||||||| | || || || ||||| || ||||| || |
Sbjct 104911 CCGCCACGTAATCGAAGAACCAAGTGAAGAGTCGATTCCTTTTGGATATTGTAGTCAGAC 104852
Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631
| || || || || |||||||||||||| |||| | ||||||||| || || ||
Sbjct 104851 AAGGTACGTCCGTCTTCAAGCTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCAGGTGGG 104792
Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691
||||| || ||||| ||| ||| ||| || | |||| ||||| | ||| |||
Sbjct 104791 ATGCCTTCTTTGTCCTGAATCTTTGCTTTCACGTTCTCGATAGTGTCAGAAGCCTCAACC 104732
Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| | || | || || || |||| || || || |||||||||||
Sbjct 104731 TCAAGAGTTATGGTCTTTCCAGTCAACGTCTTCACGAAAATCTGCAT 104685
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
||||| || | || || || |||||||| || ||||| | ||| || ||||||
Sbjct 105121 ACCAAATGCAAGGTTGATTCCTTTTGAATATTATAATCTGAGAGAGTACGACCATCCTCA 105062
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
|| || |||||||| |||| | | ||||||||| || || ||||| || || ||| |
Sbjct 105061 AGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATGCCTTCTTTATCTTGA 105002
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
||||| ||| || | || | || || | ||| ||||| | || | || ||
Sbjct 105001 ATTTTCGCTTTGACATTCTCAATCGTATCAGAAGCCTCTACCTCCAAAGTGATGGTCTTT 104942
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| ||||| ||||| ||||||||||||||
Sbjct 104941 CCAGTCAGGGTTTTAACAAAAATCTGCAT 104913
Score = 93.3 bits (102), Expect = 4e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| || |||||||||||||| ||||| | ||||| ||||| ||||| |||||
Sbjct 105565 GTTGATTCTTTTTGAATGTTATAATCTGAAAGCGTGCGGCCGTCCTCTAGCTGCTTTCCG 105506
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| |||| | | ||||||||| || || || || ||||| || |||||| |||
Sbjct 105505 GCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCTTCCTTATCCTGAATTTTGGCTTTG 105446
Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720
|| | |||| ||||| | ||| || ||||| | || | || || || |||| ||
Sbjct 105445 ACGTTCTCGATCGTGTCTGACGCT-TCAACCTCCAATGTGATGGTCTTTCCCGTCAATGT 105387
Query 118721 TTTTACAAAAATCTGCAT 118738
||| |||||||| |||||
Sbjct 105386 TTTAACAAAAATTTGCAT 105369
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
||||| || | || || ||||| ||||| ||||| || | || || ||| ||
Sbjct 105805 ACCAAATGCAAGGTTGATTCTTTCTGAATATTGTAGTCAGAAAGTGTACGACCATCTTCC 105746
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||||||||| || |||| | | ||| ||||| ||||| || || ||||| || |
Sbjct 105745 AGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGAGGGATTCCTTCCTTATCCTGA 105686
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708
||||| ||| || | ||||| ||||||| ||| ||| || || | || | || ||
Sbjct 105685 ATTTTGGCTTTGACATTTTCGATCGTGTCCGATGC-CTCAACTTCCAATGTAATGGTCTT 105627
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| |||| ||||| || ||||| |||||
Sbjct 105626 TCCAGTCAATGTTTTAACGAAAATTTGCAT 105597
>seq10900
Length=227893
Score = 111 bits (122), Expect = 1e-19
Identities = 142/194 (73%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTA 118606
|||||||||||||||||| || | || | |||| |||||| || ||||| |||||| |
Sbjct 197226 CTTTTTGAATGTTGTAAT--CTGAAAGGGTGCGTCCATCCTCTAGTTGTTTGCCAGCGAA 197283
Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666
|||||| | ||||||||| || || || || ||||| || ||| || || || |
Sbjct 197284 GATGAGTCTCTGCTGATCCGGTGGAATTCCTTCCTTATCCTGAATCTTAGCCTTGACGTT 197343
Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726
|||| ||| || | | ||| ||||||| ||| | || || || || || || || ||
Sbjct 197344 CTCGATGGTATCAGAGGCCTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCAC 197403
Query 118727 AAAAATCTGCATGG 118740
|| ||||||||||
Sbjct 197404 GAAGATCTGCATGG 197417
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433766233230112
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