Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq8311 107 2e-18
seq7323 107 2e-18
seq10623 104 3e-17
seq7200 100 3e-16
seq11361 98.7 1e-15
seq11101 96.9 4e-15
seq11025 95.1 1e-14
seq9711 91.5 2e-13
>seq8311
Length=32289
Score = 107 bits (118), Expect = 2e-18
Identities = 74/84 (88%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113
|| ||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| |
Sbjct 2113 ATTAAAAAAAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 2172
Query 60114 TACTCACCACTATACTACCGAGGA 60137
|||| |||||||||||||||||||
Sbjct 2173 TACTAACCACTATACTACCGAGGA 2196
Score = 105 bits (116), Expect = 8e-18
Identities = 72/81 (89%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 2659 AAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 2600
Query 60117 TCACCACTATACTACCGAGGA 60137
| |||||||||||||||||||
Sbjct 2599 TAACCACTATACTACCGAGGA 2579
>seq7323
Length=16445
Score = 107 bits (118), Expect = 2e-18
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand=Plus/Minus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 14595 AAAAAAAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 14536
Query 60117 TCACCACTATACTACCGAGGA-TTGA 60141
| ||||||||||||||||||| ||||
Sbjct 14535 TGACCACTATACTACCGAGGACTTGA 14510
>seq10623
Length=275489
Score = 104 bits (114), Expect = 3e-17
Identities = 68/75 (91%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 52714 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 52773
Query 60126 TACTACCGAGGATTG 60140
|||||||||||| ||
Sbjct 52774 TACTACCGAGGACTG 52788
>seq7200
Length=105881
Score = 100 bits (110), Expect = 3e-16
Identities = 155/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025
||||| | || |||||||| || || |||||||| || ||||| | || || ||
Sbjct 105586 AAACGGAGAACTAAATGCAACGTTGATTCTTTTTGAATGTTATAATCTGAAAGCGTGCGG 105527
Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085
|||| ||||||||||| || ||||| || | | |||||| || | || | | |||
Sbjct 105526 CCGTCCTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCTTCC 105467
Query 43086 TTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGT 43144
|| ||| ||| |||| | ||||| || | | |||||| || ||| || || | ||
Sbjct 105466 TTATCC-TGAATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAACCTCCAATGT 105408
Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|||||| || ||||| | || || ||||| ||||||||
Sbjct 105407 GATGGTCTTTCCCGTCAATGTTTTAACAAAAATTTGCAT 105369
Score = 87.8 bits (96), Expect = 2e-12
Identities = 153/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025
||||| | ||||||||||| || |||||||||||||| ||||| | ||||| ||
Sbjct 105130 AAACGAAGAACCAAATGCAAGGTTGATTCCTTTTGAATATTATAATCTGAGAGAGTACGA 105071
Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085
| || || || ||||| ||||| || || | || |||||| || | || | || || |
Sbjct 105070 CCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATGC-CTTC 105012
Query 43086 TTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGT 43144
|| | ||| |||| | ||||| || | | ||| || | || || || | ||
Sbjct 105011 TTTATCTTGAATTTTCGCTTTGACATTCTCAATCGTATCAGAAGCCTCTACCTCCAAAGT 104952
Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184
|||||| || || || || || || ||||| || ||||||
Sbjct 104951 GATGGTCTTTCCAGTCAGGGTTTTAACAAAAATCTGCATT 104912
>seq11361
Length=125498
Score = 98.7 bits (108), Expect = 1e-15
Identities = 71/82 (87%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 60056 GAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115
|||||| ||||| || | ||||||||||||| ||||||||||||||||||||| |||
Sbjct 122448 GAAAAAAGATCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 122507
Query 60116 CTCACCACTATACTACCGAGGA 60137
|| |||||||||||| ||||||
Sbjct 122508 CTAACCACTATACTATCGAGGA 122529
>seq11101
Length=275143
Score = 96.9 bits (106), Expect = 4e-15
Identities = 70/81 (86%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||||| ||||| || | ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 268011 AAAAAAAATCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 268070
Query 60117 TCACCACTATACTACCGAGGA 60137
| |||||||||||| ||||||
Sbjct 268071 TAACCACTATACTATCGAGGA 268091
>seq11025
Length=145197
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 1084 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 1143
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 1144 TACTATCGAGGA 1155
>seq9711
Length=151070
Score = 91.5 bits (100), Expect = 2e-13
Identities = 150/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030
||| || ||||||| ||| || || ||||| || ||||| | || || || ||||
Sbjct 104232 CAAAACTAAATGCAGAGTGGATTCTTTCTGAATGTTATAATCTGAAAGCGTGCGGCCGTC 104173
Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090
||||||||||| || ||||| || | | |||||| || | || | | ||||| ||
Sbjct 104172 CTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCTTCCTTATC 104113
Query 43091 CATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGG 43149
| ||| |||| | ||||| || | | |||||| || ||| || || | |||||||
Sbjct 104112 C-TGAATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAACCTCCAATGTGATGG 104054
Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
| || ||||| | || || || || ||||||||
Sbjct 104053 TCTTTCCCGTCAAGGTTTTGACGAAAATTTGCAT 104020
Score = 82.4 bits (90), Expect = 9e-11
Identities = 135/192 (70%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
|| |||||||||||||| || | || ||| || |||| || || || || ||||||||
Sbjct 104438 TCTTTTTGAATATTGTAGTCGGACAAAGTTCGTCCGTCCTCGAGTTGTTTGCCAGCGAAA 104379
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111
|| |||| ||||| |||| || | || ||| |||| | ||| |||| | || | |
Sbjct 104378 ATCAGTCTTTGCTGATCGGGAGGAATGCCCTCTTTGT-CTTGAATTTTCGCCTTCACGTT 104320
Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | | ||||| | || || || | || || |||||||| |||| ||||| ||
Sbjct 104319 CTCGATTGTGTCCGAAGCCTCGACCTCTAGTGTTATAGTTTTGCCAGTTAAAGTCTTGAC 104260
Query 43172 AAAGATTTGCAT 43183
||| || |||||
Sbjct 104259 AAATATCTGCAT 104248
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571730855270080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |