Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq8311 107 2e-18 seq7323 107 2e-18 seq10623 104 3e-17 seq7200 100 3e-16 seq11361 98.7 1e-15 seq11101 96.9 4e-15 seq11025 95.1 1e-14 seq9711 91.5 2e-13 >seq8311 Length=32289 Score = 107 bits (118), Expect = 2e-18 Identities = 74/84 (88%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 || ||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| | Sbjct 2113 ATTAAAAAAAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 2172 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||| ||||||||||||||||||| Sbjct 2173 TACTAACCACTATACTACCGAGGA 2196 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 2659 AAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 2600 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 2599 TAACCACTATACTACCGAGGA 2579 >seq7323 Length=16445 Score = 107 bits (118), Expect = 2e-18 Identities = 76/86 (88%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 14595 AAAAAAAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 14536 Query 60117 TCACCACTATACTACCGAGGA-TTGA 60141 | ||||||||||||||||||| |||| Sbjct 14535 TGACCACTATACTACCGAGGACTTGA 14510 >seq10623 Length=275489 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 52714 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 52773 Query 60126 TACTACCGAGGATTG 60140 |||||||||||| || Sbjct 52774 TACTACCGAGGACTG 52788 >seq7200 Length=105881 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025 ||||| | || |||||||| || || |||||||| || ||||| | || || || Sbjct 105586 AAACGGAGAACTAAATGCAACGTTGATTCTTTTTGAATGTTATAATCTGAAAGCGTGCGG 105527 Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085 |||| ||||||||||| || ||||| || | | |||||| || | || | | ||| Sbjct 105526 CCGTCCTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCTTCC 105467 Query 43086 TTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGT 43144 || ||| ||| |||| | ||||| || | | |||||| || ||| || || | || Sbjct 105466 TTATCC-TGAATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAACCTCCAATGT 105408 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| || ||||| | || || ||||| |||||||| Sbjct 105407 GATGGTCTTTCCCGTCAATGTTTTAACAAAAATTTGCAT 105369 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025 ||||| | ||||||||||| || |||||||||||||| ||||| | ||||| || Sbjct 105130 AAACGAAGAACCAAATGCAAGGTTGATTCCTTTTGAATATTATAATCTGAGAGAGTACGA 105071 Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085 | || || || ||||| ||||| || || | || |||||| || | || | || || | Sbjct 105070 CCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATGC-CTTC 105012 Query 43086 TTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGT 43144 || | ||| |||| | ||||| || | | ||| || | || || || | || Sbjct 105011 TTTATCTTGAATTTTCGCTTTGACATTCTCAATCGTATCAGAAGCCTCTACCTCCAAAGT 104952 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 |||||| || || || || || || ||||| || |||||| Sbjct 104951 GATGGTCTTTCCAGTCAGGGTTTTAACAAAAATCTGCATT 104912 >seq11361 Length=125498 Score = 98.7 bits (108), Expect = 1e-15 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 60056 GAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||| ||||| || | ||||||||||||| ||||||||||||||||||||| ||| Sbjct 122448 GAAAAAAGATCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 122507 Query 60116 CTCACCACTATACTACCGAGGA 60137 || |||||||||||| |||||| Sbjct 122508 CTAACCACTATACTATCGAGGA 122529 >seq11101 Length=275143 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||| || | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 268011 AAAAAAAATCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 268070 Query 60117 TCACCACTATACTACCGAGGA 60137 | |||||||||||| |||||| Sbjct 268071 TAACCACTATACTATCGAGGA 268091 >seq11025 Length=145197 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1084 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 1143 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1144 TACTATCGAGGA 1155 >seq9711 Length=151070 Score = 91.5 bits (100), Expect = 2e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 ||| || ||||||| ||| || || ||||| || ||||| | || || || |||| Sbjct 104232 CAAAACTAAATGCAGAGTGGATTCTTTCTGAATGTTATAATCTGAAAGCGTGCGGCCGTC 104173 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 ||||||||||| || ||||| || | | |||||| || | || | | ||||| || Sbjct 104172 CTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCTTCCTTATC 104113 Query 43091 CATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGG 43149 | ||| |||| | ||||| || | | |||||| || ||| || || | ||||||| Sbjct 104112 C-TGAATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAACCTCCAATGTGATGG 104054 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || ||||| | || || || || |||||||| Sbjct 104053 TCTTTCCCGTCAAGGTTTTGACGAAAATTTGCAT 104020 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || |||||||||||||| || | || ||| || |||| || || || || |||||||| Sbjct 104438 TCTTTTTGAATATTGTAGTCGGACAAAGTTCGTCCGTCCTCGAGTTGTTTGCCAGCGAAA 104379 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || |||| ||||| |||| || | || ||| |||| | ||| |||| | || | | Sbjct 104378 ATCAGTCTTTGCTGATCGGGAGGAATGCCCTCTTTGT-CTTGAATTTTCGCCTTCACGTT 104320 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||| | || || || | || || |||||||| |||| ||||| || Sbjct 104319 CTCGATTGTGTCCGAAGCCTCGACCTCTAGTGTTATAGTTTTGCCAGTTAAAGTCTTGAC 104260 Query 43172 AAAGATTTGCAT 43183 ||| || ||||| Sbjct 104259 AAATATCTGCAT 104248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571730855270080