Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_002484.2
Length=56426
Score E
Sequences producing significant alignments: (Bits) Value
seq2486 165 3e-36
seq7345 129 2e-25
>seq2486
Length=3064
Score = 165 bits (182), Expect = 3e-36
Identities = 315/460 (68%), Gaps = 8/460 (2%)
Strand=Plus/Plus
Query 10633 AAGCTGGCGCCTTCACTGGGGCTCCTATCGAGAAAGAGATCACCTGGAAACAGGGCGATA 10692
|||| || || |||||||| || | ||||| |||||| |||||| ||||||||
Sbjct 178 AAGCAGGTGCGTTCACTGGCCGGCCAGTGGAGAAGGAGATCCGCTGGAAGCAGGGCGACG 237
Query 10693 AGGAACTGACTGCAACCGTGTACGTCCGGCC-CTTGTCGTACAGCACAGCTGTTTCTGAC 10751
|||||||||| || |||||||| || ||||| || | | ||| | || || || |||
Sbjct 238 AGGAACTGACCGCCACCGTGTATGTGCGGCCGCTGGGTTTCCAGG-CGGCGGTGTCCGAC 296
Query 10752 CTTCTG---GCCATGAATGGCAAGGTGGATGGGGTAGCGGGTCGGATAGCCGCGTCAATC 10808
| ||| |||| ||| |||| || || || || || || || || || |||
Sbjct 297 GTGCTGTCGGCCACGAA---CAAGCACGACGGCGTGGCCGGCCGCATCGCGGCCAGCATC 353
Query 10809 GTGGATGAAGAGGGTAAGCCGGTATTCACGCCGGCAGATATCACCGGCGAGGCCGATCCC 10868
|| || | || ||| | || ||||| || || || || ||||| ||||||||
Sbjct 354 TGCGACGAGCACGGCAAGGCCGTTTTCACCGTCGCGGACATTACGGGCGAAGCCGATCCG 413
Query 10869 GGTCGCGGCGCGCTGGATGGAAACCTGACCATCGCCCTGCTCACCGTGATCGCCGAGGTG 10928
| |||||||| ||||| || |||||| | | || ||||| | | |||| |||||||
Sbjct 414 GAGCGCGGCGCCCTGGACGGCAACCTGTCGGTGGCGCTGCTGATGGCCATCGGCGAGGTG 473
Query 10929 AACAACCTGGGAAAGACGACCAGCTCAGCGAACTAGATGAGGTGTGGCATGAGCTGGTGA 10988
|||||||||||||| | || |||| | | |||||| ||||| ||||||||
Sbjct 474 AACAACCTGGGAAAAGCTACGAGCTGACCCCGGAGGATGAGCTGTGGTGCGAGCTGGTCC 533
Query 10989 TGTGCGGGATTGGCGGCAGAACCATCGCAGAAGCCAAGTCGCGTCTCACCTACCGGGAGT 11048
|| ||||| |||||| | | |||||| || || | | | |||| | |||||| |
Sbjct 534 TGAATGGGATCGGCGGCCGCAGCATCGCTGAGGCAATGGAATGCCTCAGCATCCGGGAAT 593
Query 11049 TCCTGAGCTGGTGCAAGTTCCGGAGCAAGCGCGGGAGTCT 11088
||| | |||| || | ||| ||| ||||| || ||
Sbjct 594 TCCAGCTCTGGAGCGTATACCGCGCCAAACGCGGCAGCCT 633
>seq7345
Length=15758
Score = 129 bits (142), Expect = 2e-25
Identities = 74/76 (97%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 24666 ATGCCCATCACCGAGCAGAAACTGCTGCATATCCTCCCGAACGCCGGCCCTCGAGCCGGC 24725
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 15534 ATGCCCATCACTGAGCAGCAACTGCTGCATATCCTCCCGAACGCCGGCCCTCGAGCCGGC 15593
Query 24726 GTTTTTGTTGGTGCGC 24741
||||||||||||||||
Sbjct 15594 GTTTTTGTTGGTGCGC 15609
Score = 87.8 bits (96), Expect = 6e-13
Identities = 72/88 (82%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 20789 TATCCGGCCTGGACTGGTTGCTGCAACCTCTTCTTTCACCTCCGGAGAGCGGGCGGTCGT 20848
|||| | | ||| ||||| |||||||||||||| ||||| || |||| || || || |||
Sbjct 13125 TATCTGCCTTGGGCTGGTCGCTGCAACCTCTTCGTTCACGTCTGGAGCGCAGGTGGACGT 13184
Query 20849 TGGGTGGAGGGCGGGAATCAGGGAGATA 20876
|||||| ||| |||| |||||||||||
Sbjct 13185 AGGGTGGCGGGTGGGAGTCAGGGAGATA 13212
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 180415595658816
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |