Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_002484.2 Length=56426 Score E Sequences producing significant alignments: (Bits) Value seq2486 165 3e-36 seq7345 129 2e-25 >seq2486 Length=3064 Score = 165 bits (182), Expect = 3e-36 Identities = 315/460 (68%), Gaps = 8/460 (2%) Strand=Plus/Plus Query 10633 AAGCTGGCGCCTTCACTGGGGCTCCTATCGAGAAAGAGATCACCTGGAAACAGGGCGATA 10692 |||| || || |||||||| || | ||||| |||||| |||||| |||||||| Sbjct 178 AAGCAGGTGCGTTCACTGGCCGGCCAGTGGAGAAGGAGATCCGCTGGAAGCAGGGCGACG 237 Query 10693 AGGAACTGACTGCAACCGTGTACGTCCGGCC-CTTGTCGTACAGCACAGCTGTTTCTGAC 10751 |||||||||| || |||||||| || ||||| || | | ||| | || || || ||| Sbjct 238 AGGAACTGACCGCCACCGTGTATGTGCGGCCGCTGGGTTTCCAGG-CGGCGGTGTCCGAC 296 Query 10752 CTTCTG---GCCATGAATGGCAAGGTGGATGGGGTAGCGGGTCGGATAGCCGCGTCAATC 10808 | ||| |||| ||| |||| || || || || || || || || || ||| Sbjct 297 GTGCTGTCGGCCACGAA---CAAGCACGACGGCGTGGCCGGCCGCATCGCGGCCAGCATC 353 Query 10809 GTGGATGAAGAGGGTAAGCCGGTATTCACGCCGGCAGATATCACCGGCGAGGCCGATCCC 10868 || || | || ||| | || ||||| || || || || ||||| |||||||| Sbjct 354 TGCGACGAGCACGGCAAGGCCGTTTTCACCGTCGCGGACATTACGGGCGAAGCCGATCCG 413 Query 10869 GGTCGCGGCGCGCTGGATGGAAACCTGACCATCGCCCTGCTCACCGTGATCGCCGAGGTG 10928 | |||||||| ||||| || |||||| | | || ||||| | | |||| ||||||| Sbjct 414 GAGCGCGGCGCCCTGGACGGCAACCTGTCGGTGGCGCTGCTGATGGCCATCGGCGAGGTG 473 Query 10929 AACAACCTGGGAAAGACGACCAGCTCAGCGAACTAGATGAGGTGTGGCATGAGCTGGTGA 10988 |||||||||||||| | || |||| | | |||||| ||||| |||||||| Sbjct 474 AACAACCTGGGAAAAGCTACGAGCTGACCCCGGAGGATGAGCTGTGGTGCGAGCTGGTCC 533 Query 10989 TGTGCGGGATTGGCGGCAGAACCATCGCAGAAGCCAAGTCGCGTCTCACCTACCGGGAGT 11048 || ||||| |||||| | | |||||| || || | | | |||| | |||||| | Sbjct 534 TGAATGGGATCGGCGGCCGCAGCATCGCTGAGGCAATGGAATGCCTCAGCATCCGGGAAT 593 Query 11049 TCCTGAGCTGGTGCAAGTTCCGGAGCAAGCGCGGGAGTCT 11088 ||| | |||| || | ||| ||| ||||| || || Sbjct 594 TCCAGCTCTGGAGCGTATACCGCGCCAAACGCGGCAGCCT 633 >seq7345 Length=15758 Score = 129 bits (142), Expect = 2e-25 Identities = 74/76 (97%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 24666 ATGCCCATCACCGAGCAGAAACTGCTGCATATCCTCCCGAACGCCGGCCCTCGAGCCGGC 24725 ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 15534 ATGCCCATCACTGAGCAGCAACTGCTGCATATCCTCCCGAACGCCGGCCCTCGAGCCGGC 15593 Query 24726 GTTTTTGTTGGTGCGC 24741 |||||||||||||||| Sbjct 15594 GTTTTTGTTGGTGCGC 15609 Score = 87.8 bits (96), Expect = 6e-13 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 20789 TATCCGGCCTGGACTGGTTGCTGCAACCTCTTCTTTCACCTCCGGAGAGCGGGCGGTCGT 20848 |||| | | ||| ||||| |||||||||||||| ||||| || |||| || || || ||| Sbjct 13125 TATCTGCCTTGGGCTGGTCGCTGCAACCTCTTCGTTCACGTCTGGAGCGCAGGTGGACGT 13184 Query 20849 TGGGTGGAGGGCGGGAATCAGGGAGATA 20876 |||||| ||| |||| ||||||||||| Sbjct 13185 AGGGTGGCGGGTGGGAGTCAGGGAGATA 13212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180415595658816