Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq7200 114 2e-20 seq6771 111 2e-19 seq9711 107 3e-18 seq9876 105 1e-17 seq10900 86.0 9e-12 >seq7200 Length=105881 Score = 114 bits (126), Expect = 2e-20 Identities = 99/120 (83%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 |||||||| || || ||||| ||| || |||||||||||||| ||||| | | ||| || Sbjct 105121 ACCAAATGCAAGGTTGATTCCTTTTGA-ATATTATAATCTGAGAGAGTACGACCATCCTC 105063 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | ||| ||||||||||| |||||||| |||||||| || || || |||||||||||||| Sbjct 105062 AAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATGCCTTCTTTATCTTG 105003 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 || ||||| || || |||||||| || || ||||| ||||| || | | || || Sbjct 105349 ACTAAATGCAACGTTGATTCTTTTTGAATGTTGTAATCAGAAAGTGTGCGACCGTCCTCA 105290 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||| |||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 105289 AGTTGTTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAGGAATTCCTTCCTTATCTTG 105231 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 || ||||| || || |||||||| || |||||||||||||| || | || || ||| Sbjct 105577 ACTAAATGCAACGTTGATTCTTTTTGAATGTTATAATCTGAAAGCGTGCGGCCGTCCTCT 105518 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | || ||||| || || ||||| || ||||||||||| || |||||||| ||||| || Sbjct 105517 AGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCTTCCTTATCCTG 105459 >seq6771 Length=7421 Score = 111 bits (122), Expect = 2e-19 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||| ||| | |||||||| || || ||||| || ||||||||||||| ||| || Sbjct 303 ACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCGGAAAGAGTTCTGCCATCTTCA 244 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 | |||||| ||||||||||| | | |||||||| |||||||| |||||||| ||||| Sbjct 243 AGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCTTGG 184 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 ||| |||||| ||| ||||| || ||||| |||||| Sbjct 183 ATCTTAGCTTTGACATTCTCTATAGTGTCTGAAGCTTCAACTTCGAGGGTGATAGTTTTA 124 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || | ||||| | ||| || ||||| Sbjct 123 CCAGTGAGAGTTTTTACGAAGATCTGCAT 95 >seq9711 Length=151070 Score = 107 bits (118), Expect = 3e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| || || |||||||| || || || || ||||| || | || ||| || Sbjct 104000 ACCAAATGCAAGGTCGATTCTTTCTGAATGTTGTAGTCGGAAAGTGTACGGCCATCTTCC 103941 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||||||||| || || ||||| |||||||||||||| |||||||| |||||||| Sbjct 103940 AGTTGTTTTCCAGCGAAGATTAATCTCTGCTGATCCGGAGGGATTCCTTCCTTATCTTG 103882 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 |||||||||||||| | ||| | || | || |||||||| ||||| || || || Sbjct 104475 TCCACCTCTAAGTCGAAGTACAAGGTGGAGTGTGGATTCTTTTTGAATATTGTAGTCGGA 104416 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||||| | || || | |||||| ||||| ||||||| |||||||||||| ||||| Sbjct 104415 CAAAGTTCGTCCGTCCTCGAGTTGTTTGCCAGCGAAAATCAGTCTTTGCTGATCGGGAGG 104356 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| || ||||| ||||| Sbjct 104355 AATGCCCTCTTTGTCTTG 104338 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| || || ||||||||||| ||||| ||||| || || || |||||| Sbjct 103790 CCACCACGAAGCCTCAAGACCAAATGTAACGTAGACTCTTTCTGAATGTTGTAGTCTGAA 103731 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || | |||||||| ||||| || || || || ||||| ||||| Sbjct 103730 AGTGTACGACCATCTTCCAGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGAGGG 103671 Query 146171 ATTCCTTCTTTATC 146184 |||||||| ||||| Sbjct 103670 ATTCCTTCCTTATC 103657 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||| || || || ||||| | ||| |||||||| || |||||||||||| Sbjct 104246 CCTCCACGAAGCCTCAAAACTAAATGCAGAGTGGATTCTTTCTGAATGTTATAATCTGAA 104187 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | || || |||| || ||||| || || ||||| || ||||||||||| || Sbjct 104186 AGCGTGCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGG 104127 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 104126 ATTCCTTCCTTATCCTG 104110 >seq9876 Length=23795 Score = 105 bits (116), Expect = 1e-17 Identities = 92/112 (82%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124 || |||||||||||||||||||| ||| || || || || || || | || |||| ||| Sbjct 12940 AACACCAAATGTAAAGTAGATTCCTTTTGA-ATGTTGTAGTCCGACAATGTCCTGCCATC 12882 Query 146125 ATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCT 146176 || ||||| || |||||||| ||||||||||||||||| || ||||||||| Sbjct 12881 TTCCAATTGCTTGCCAGCAAAGATCAATCTTTGCTGATCTGGCGGAATTCCT 12830 >seq10900 Length=227893 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || || ||||||||||| || | | ||| |||| |||||| ||||| || || | ||| Sbjct 197234 ATGTTGTAATCTGAAAGGGTGCGTCCATCCTCTAGTTGTTTGCCAGCGAAGATGAGTCTC 197293 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||||||||| ||||||||||| ||||| || Sbjct 197294 TGCTGATCCGGTGGAATTCCTTCCTTATCCTG 197325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743413607045120