Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq7200 114 2e-20
seq6771 111 2e-19
seq9711 107 3e-18
seq9876 105 1e-17
seq10900 86.0 9e-12
>seq7200
Length=105881
Score = 114 bits (126), Expect = 2e-20
Identities = 99/120 (83%), Gaps = 2/120 (2%)
Strand=Plus/Minus
Query 146069 ACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127
|||||||| || || ||||| ||| || |||||||||||||| ||||| | | ||| ||
Sbjct 105121 ACCAAATGCAAGGTTGATTCCTTTTGA-ATATTATAATCTGAGAGAGTACGACCATCCTC 105063
Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187
| ||| ||||||||||| |||||||| |||||||| || || || ||||||||||||||
Sbjct 105062 AAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATGCCTTCTTTATCTTG 105003
Score = 111 bits (122), Expect = 2e-19
Identities = 96/119 (81%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128
|| ||||| || || |||||||| || || ||||| ||||| || | | || ||
Sbjct 105349 ACTAAATGCAACGTTGATTCTTTTTGAATGTTGTAATCAGAAAGTGTGCGACCGTCCTCA 105290
Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187
| |||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 105289 AGTTGTTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAGGAATTCCTTCCTTATCTTG 105231
Score = 93.3 bits (102), Expect = 6e-14
Identities = 92/119 (77%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128
|| ||||| || || |||||||| || |||||||||||||| || | || || |||
Sbjct 105577 ACTAAATGCAACGTTGATTCTTTTTGAATGTTATAATCTGAAAGCGTGCGGCCGTCCTCT 105518
Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187
| || ||||| || || ||||| || ||||||||||| || |||||||| ||||| ||
Sbjct 105517 AGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCTTCCTTATCCTG 105459
>seq6771
Length=7421
Score = 111 bits (122), Expect = 2e-19
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128
|||| ||| | |||||||| || || ||||| || ||||||||||||| ||| ||
Sbjct 303 ACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCGGAAAGAGTTCTGCCATCTTCA 244
Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188
| |||||| ||||||||||| | | |||||||| |||||||| |||||||| |||||
Sbjct 243 AGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCTTGG 184
Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248
||| |||||| ||| ||||| || ||||| ||||||
Sbjct 183 ATCTTAGCTTTGACATTCTCTATAGTGTCTGAAGCTTCAACTTCGAGGGTGATAGTTTTA 124
Query 146249 CCTGTTAATGTTTTAATGAATATTTGCAT 146277
|| || | ||||| | ||| || |||||
Sbjct 123 CCAGTGAGAGTTTTTACGAAGATCTGCAT 95
>seq9711
Length=151070
Score = 107 bits (118), Expect = 3e-18
Identities = 95/119 (80%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128
|||||||| || || |||||||| || || || || ||||| || | || ||| ||
Sbjct 104000 ACCAAATGCAAGGTCGATTCTTTCTGAATGTTGTAGTCGGAAAGTGTACGGCCATCTTCC 103941
Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187
| |||||||||||| || || ||||| |||||||||||||| |||||||| ||||||||
Sbjct 103940 AGTTGTTTTCCAGCGAAGATTAATCTCTGCTGATCCGGAGGGATTCCTTCCTTATCTTG 103882
Score = 100 bits (110), Expect = 4e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109
|||||||||||||| | ||| | || | || |||||||| ||||| || || ||
Sbjct 104475 TCCACCTCTAAGTCGAAGTACAAGGTGGAGTGTGGATTCTTTTTGAATATTGTAGTCGGA 104416
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
| ||||| | || || | |||||| ||||| ||||||| |||||||||||| |||||
Sbjct 104415 CAAAGTTCGTCCGTCCTCGAGTTGTTTGCCAGCGAAAATCAGTCTTTGCTGATCGGGAGG 104356
Query 146170 AATTCCTTCTTTATCTTG 146187
||| || ||||| |||||
Sbjct 104355 AATGCCCTCTTTGTCTTG 104338
Score = 98.7 bits (108), Expect = 1e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| | ||| || || ||||||||||| ||||| ||||| || || || ||||||
Sbjct 103790 CCACCACGAAGCCTCAAGACCAAATGTAACGTAGACTCTTTCTGAATGTTGTAGTCTGAA 103731
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| || | | ||| || | |||||||| ||||| || || || || ||||| |||||
Sbjct 103730 AGTGTACGACCATCTTCCAGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGAGGG 103671
Query 146171 ATTCCTTCTTTATC 146184
|||||||| |||||
Sbjct 103670 ATTCCTTCCTTATC 103657
Score = 98.7 bits (108), Expect = 1e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|| || | ||| || || || ||||| | ||| |||||||| || ||||||||||||
Sbjct 104246 CCTCCACGAAGCCTCAAAACTAAATGCAGAGTGGATTCTTTCTGAATGTTATAATCTGAA 104187
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| || | || || |||| || ||||| || || ||||| || ||||||||||| ||
Sbjct 104186 AGCGTGCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGG 104127
Query 146171 ATTCCTTCTTTATCTTG 146187
|||||||| ||||| ||
Sbjct 104126 ATTCCTTCCTTATCCTG 104110
>seq9876
Length=23795
Score = 105 bits (116), Expect = 1e-17
Identities = 92/112 (82%), Gaps = 2/112 (2%)
Strand=Plus/Minus
Query 146066 AATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124
|| |||||||||||||||||||| ||| || || || || || || | || |||| |||
Sbjct 12940 AACACCAAATGTAAAGTAGATTCCTTTTGA-ATGTTGTAGTCCGACAATGTCCTGCCATC 12882
Query 146125 ATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCT 146176
|| ||||| || |||||||| ||||||||||||||||| || |||||||||
Sbjct 12881 TTCCAATTGCTTGCCAGCAAAGATCAATCTTTGCTGATCTGGCGGAATTCCT 12830
>seq10900
Length=227893
Score = 86.0 bits (94), Expect = 9e-12
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155
|| || ||||||||||| || | | ||| |||| |||||| ||||| || || | |||
Sbjct 197234 ATGTTGTAATCTGAAAGGGTGCGTCCATCCTCTAGTTGTTTGCCAGCGAAGATGAGTCTC 197293
Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187
||||||||||| ||||||||||| ||||| ||
Sbjct 197294 TGCTGATCCGGTGGAATTCCTTCCTTATCCTG 197325
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743413607045120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |