Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq7200 113 3e-20 seq9711 93.3 3e-14 seq9876 82.4 6e-11 >seq7200 Length=105881 Score = 113 bits (124), Expect = 3e-20 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 ||||||||||||||||||||||| || | | ||| || || || | ||||||||| Sbjct 105337 GTTGATTCTTTTTGAATGTTGTAATCAGAAAGTGTGCGACCGTCCTCAAGTTGTTTGCCA 105278 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TT 18247 ||| |||| | |||||| |||||| || | ||||||||||| ||||| |||| || Sbjct 105277 GCAAAGATCAATCTTTGCTGATCCGGAGGAATTCCTTCCTTATCTTGAATTT-TTGCTTT 105219 Query 18248 GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307 ||| | | | | ||||| | |||| ||| | |||||| |||| || || | || Sbjct 105218 GACGTTTTCGATCGTGTCCGAAGCCTCGACTTCCAATGTGATGGTTTTTCCTGTGAGAGT 105159 Query 18308 TTTTACAAAAATTTGCATT 18326 ||| |||||||| |||||| Sbjct 105158 TTTGACAAAAATCTGCATT 105140 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 ||||||||||| ||||| |||||||| | | ||| || |||||||| ||||| || Sbjct 105793 GTTGATTCTTTCTGAATATTGTAGTCAGAAAGTGTACGACCATCTTCCAGCTGTTTTCCG 105734 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTT- 18247 ||| |||| | || |||||||| || | ||||||||||| ||||| | |||| Sbjct 105733 GCAAAGATTAACCTCTGTTGATCTGGAGGGATTCCTTCCTTATCCTGAATTT-TGGCTTT 105675 Query 18248 GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307 ||| | | | | ||||| | ||| ||| | || ||| | || || |||||||| Sbjct 105674 GACATTTTCGATCGTGTCCGATGCCTCAACTTCCAATGTAATGGTCTTTCCAGTCAATGT 105615 Query 18308 TTTTACAAAAATTTGCAT 18325 ||| || ||||||||||| Sbjct 105614 TTTAACGAAAATTTGCAT 105597 >seq9711 Length=151070 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || |||||||| |||||||||||||||| | ||| | |||||||| |||||| || Sbjct 103988 GTCGATTCTTTCTGAATGTTGTAGTCGGAAAGTGTACGGCCATCTTCCAGTTGTTTTCCA 103929 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TT 18247 || |||| | ||| || |||||| || | ||||||||||| ||||| | || || Sbjct 103928 GCGAAGATTAATCTCTGCTGATCCGGAGGGATTCCTTCCTTATCTTGAATTT-TGGCTTT 103870 Query 18248 GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307 ||| | | ||| ||||| | || || | || ||| ||||||| || | || Sbjct 103869 GACATTTTCAATTGTGTCCGAAGCTTCAACCTCCAATGTAATGGTTTTGCCAGTGAGAGT 103810 Query 18308 TTTTACAAAAATTTGCAT 18325 ||| |||||||| ||||| Sbjct 103809 TTTAACAAAAATCTGCAT 103792 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 |||| |||||| | ||| ||||| |||||||||||||| |||||||||| || ||| Sbjct 104465 AGTCGAAGTACAAGGTGGAGTGTGGATTCTTTTTGAATATTGTAGTCGGACAAAGTTCGT 104406 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | || || | ||||||||| || | || |||||||| ||||| || | ||| || Sbjct 104405 CCGTCCTCGAGTTGTTTGCCAGCGAAAATCAGTCTTTGCTGATCGGGAGGAATGCCCTCT 104346 Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287 || || ||||| ||| || | | | ||||| | |||| || | || Sbjct 104345 TTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCCTCGACCTCTAGTGTT 104286 Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||||| || || || || ||||| || ||||| Sbjct 104285 ATAGTTTTGCCAGTTAAAGTCTTGACAAATATCTGCAT 104248 >seq9876 Length=23795 Score = 82.4 bits (90), Expect = 6e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || ||||| ||||||||||||||||| | || ||| | | |||||||||||| ||||| Sbjct 12925 GTAGATTCCTTTTGAATGTTGTAGTCCGACAATGTCCTGCCATCTTCCAATTGCTTGCCA 12866 Query 18189 GCATAGATAAGTCTTTGTTGATC 18211 ||| |||| | |||||| ||||| Sbjct 12865 GCAAAGATCAATCTTTGCTGATC 12843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379287892177320