Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq6771 136 4e-27 seq10678 122 8e-23 seq7200 111 1e-19 seq9711 100 3e-16 seq10234 93.3 4e-14 >seq6771 Length=7421 Score = 136 bits (150), Expect = 4e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || |||||||| ||||| || || ||||| |||||| |||| |||||| | || Sbjct 94 CATGCAGATCTTCGTAAAAACTCTCACTGGTAAAACTATCACCCTCGAAGTTGAAGCTTC 153 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | || | |||||| | || ||||| |||||| | || || || || Sbjct 154 AGACACTATAGAGAATGTCAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCAGATCA 213 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||||||||| || ||||||||||| | ||||| | ||| | ||| ||||| Sbjct 214 GCAGCGTCTAATTTTTGCTGGCAAACAACTTGAAGATGGCAGAACTCTTTCCGACTATAA 273 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || ||||| || ||||||||||| || Sbjct 274 CATCCAGAAGGAATCTACGCTTCATCTGGTTCT 306 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || |||||||| ||||| || || ||||| |||||| | || |||||| | || Sbjct 322 CATGCAGATCTTCGTAAAAACTCTCACCGGTAAAACTATCACCCTTGAAGTTGAAGCTTC 381 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | | || | || ||| | ||| |||||| || || | || || || || Sbjct 382 GGATACTATAGAGAACGTGAAAGCTAAAATCCAGGACAAAGAGGGAATTCCCCCGGATCA 441 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||||| ||||||||||||||| | ||||| | |||| | ||||| || Sbjct 442 ACAGCGTCTAATTTTCGCTGGCAAACAGCTTGAAGATGGCAGGACTCTTTCAGATTACAA 501 Query 31372 CATTCAAAAAGAATCGACTCTTCA 31395 ||| ||||| ||||| || || || Sbjct 502 CATCCAAAAGGAATCAACACTCCA 525 >seq10678 Length=68604 Score = 122 bits (134), Expect = 8e-23 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 57669 GAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAAC 57728 || ||| | ||||| || || ||||| ||||||||||| || ||||||||||||||| Sbjct 45309 GAAAGATACTTTATCTCTCATGTCTTGGCATTTTTCGCCGCTTCTGATGGTATTGTTAAC 45368 Query 57729 GAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTAC 57788 |||||| || | |||||||| || || ||| |||| | || || | || || ||| Sbjct 45369 GAGAATCTGATTGAAAGATTCAGTCAGGAGGTGAAAGTCGCTGAAGCACGTTGTTTCTAC 45428 Query 57789 GGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACG 57848 || || ||| ||||||| || || | ||||| ||||||||||| | ||||| || || Sbjct 45429 GGCTTCCAAATGGCCATAGAGAATATTCATTCCGAAATGTATTCTTTGCTCATTGAAACT 45488 Query 57849 TA 57850 || Sbjct 45489 TA 45490 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 57957 GCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGC 58016 || |||||| | || | ||||||| ||||| || ||||| ||||| ||||| ||| Sbjct 45787 GCTACGTTCCCAGAACGTGTAATCGCATTCGCGGCAGTCGAGGGTATTTTCTTCAGCGGC 45846 Query 58017 AGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGC 58076 || ||||| || ||||||||| |||| ||||| || | ||||| || || || |||||| Sbjct 45847 AGTTTTGCAGCGATATTTTGGCTGAAAAAACGAGGAGTCATGCCAGGTCTTACTTTTAGC 45906 Query 58077 AACGAGTTGATATCGCGCGACGA 58099 ||||| | || ||||| || || Sbjct 45907 AACGAACTCATCTCGCGGGATGA 45929 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 57510 GAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGAC 57569 || ||||| ||||| || ||| | | || || || ||||| ||| ||||||| || Sbjct 44852 GAGCCACTGTTGCAGGAAGGTCCAAATCGTTTCGTAATTTTTCCTATTCAATATCCTGAT 44911 Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTA 57623 || ||| | ||||| |||||||| | ||||||||||||||| | ||||||||| Sbjct 44912 ATCTGGGATATGTATAAAAAGGCTGTAGCATCGTTTTGGACTATAGAAGAAGTA 44965 >seq7200 Length=105881 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| |||| || || || || || | || ||||| | || Sbjct 104685 ATGCAGATTTTCGTGAAGACGTTGACTGGAAAGACCATAACTCTTGAGGTTGAGGCTTCT 104744 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| | || ||| || ||| | |||||| |||||| | || || ||||| Sbjct 104745 GACACTATCGAGAACGTGAAAGCAAAGATTCA-GGACAAAGAAGGCATCCCACCTGACCA 104803 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||| | || || ||||| |||||| | |||||| || || || || || Sbjct 104804 GCAGCGTTTGATCTTTGCTGGAAAACAGCTTGAAGACGGACGTACCTTGTCTGACTACAA 104863 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| |||||||||||||| |||| ||| || | | ||||| Sbjct 104864 TATCCAAAAGGAATCGACTCTTCACTTGGTTCTTCGATTACGTGGCGG 104911 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || || ||||| ||||| ||||| ||||| | || || || | || Sbjct 105141 ATGCAGATTTTTGTCAAAACTCTCACAGGAAAAACCATCACATTGGAAGTCGAGGCTTCG 105200 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| |||||| | ||| || |||||||| | || || || ||| Sbjct 105201 GACACGATCGAAAACGTCAAAGCAAAAATTCAAGATAAGGAAGGAATTCCTCCGGATCAG 105260 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || || ||||||||||| | || ||| | || | ||||| ||| Sbjct 105261 CAAAGATTGATCTTTGCTGGCAAACAACTTGAGGACGGTCGCACACTTTCTGATTACAAC 105320 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||||||||| || | ||| | || || || || | || |||| Sbjct 105321 ATTCAAAAAGAATCAACGTTGCATTTAGTTCTCCGATTGCGTGGTGGTA 105369 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || || |||| || || || ||||| | || |||||| |||| Sbjct 105369 ATGCAAATTTTTGTTAAAACATTGACGGGAAAGACCATCACATTGGAGGTTGAAGCGTCA 105428 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | ||| ||| |||||||| | || || || ||| Sbjct 105429 GACACGATCGAGAACGTCAAAGCCAAAATTCAGGATAAGGAAGGAATCCCACCGGATCAG 105488 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || ||||| || || ||| | || ||| || | ||||||||| Sbjct 105489 CAGAGGTTGATCTTCGCCGGAAAGCAGCTAGAGGACGGCCGCACGCTTTCAGATTATAAC 105548 Query 31373 ATTCAAAAAGAATCGAC 31389 |||||||||||||| || Sbjct 105549 ATTCAAAAAGAATCAAC 105565 >seq9711 Length=151070 Score = 100 bits (110), Expect = 3e-16 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || || ||||| || |||||||| || || | || |||||| | || Sbjct 103792 ATGCAGATTTTTGTTAAAACTCTCACTGGCAAAACCATTACATTGGAGGTTGAAGCTTCG 103851 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| |||||| | ||| || |||||||| | || || || ||| Sbjct 103852 GACACAATTGAAAATGTCAAAGCCAAAATTCAAGATAAGGAAGGAATCCCTCCGGATCAG 103911 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA---CTCTATGACTATGAGCGATTAT 31369 ||| | |||| |||||||| ||||| ||||||| | || ||| | ||| || Sbjct 103912 CAGAGATTAATCTTCGCTGGAAAACAACTGGAAGATGGCCGTAC-ACTTTC--CGACTAC 103968 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||| ||||||||||| | ||| |||| || Sbjct 103969 AACATTCAGAAAGAATCGACCTTGCATTTGGTTCT 104003 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || |||| || || || ||||| | || |||||| |||| Sbjct 104020 ATGCAAATTTTCGTCAAAACCTTGACGGGAAAGACCATCACATTGGAGGTTGAAGCGTCA 104079 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | ||| ||| |||||||| | || || || ||| Sbjct 104080 GACACGATCGAGAACGTCAAAGCCAAAATTCAGGATAAGGAAGGAATCCCACCGGATCAG 104139 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || ||||| || || ||| | || ||| || | ||||||||| Sbjct 104140 CAGAGGTTGATCTTCGCCGGAAAGCAGCTAGAGGACGGCCGCACGCTTTCAGATTATAAC 104199 Query 31373 ATTCAAAAAGAATCGACTCTTCAT 31396 ||||| |||||||| ||||| ||| Sbjct 104200 ATTCAGAAAGAATCCACTCTGCAT 104223 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||| | || |||||||| || || | || || || | || Sbjct 104248 ATGCAGATATTTGTCAAGACTTTAACTGGCAAAACTATAACACTAGAGGTCGAGGCTTCG 104307 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || ||| ||||| || ||| | || ||||| ||| Sbjct 104308 GACACAATCGAGAACGTGAAGGCGAAAATTCAAGACAAAGAGGGCATTCCTCCCGATCAG 104367 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || |||||||||||||| | || ||| ||| || ||| || || Sbjct 104368 CAAAGACTGATTTTCGCTGGCAAACAACTCGAGGACGGACGAACTTTGTCCGACTACAAT 104427 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||||||||| || || || || |||||| |||| || || || Sbjct 104428 ATTCAAAAAGAATCCACACTCCACCTTGTACTTCGACTTAGAGGTGG 104474 >seq10234 Length=192330 Score = 93.3 bits (102), Expect = 4e-14 Identities = 178/260 (68%), Gaps = 7/260 (3%) Strand=Plus/Plus Query 22414 CCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCC 22473 ||| || || |||| ||||||||| | |||||| | || || | |||||| || Sbjct 1824 CCATAATCCTCTGGCAGTCAAATCTCGTAGCAGATGCGGATTGACGATGACAAACTCTCC 1883 Query 22474 GGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCC 22533 || || ||||| | ||| || ||| ||| ||||||| | ||||| || || || Sbjct 1884 AGATAATACGCGCCTCACGTAGATATTGCTCGTGTACGGTTCAATGGATTCGTTATTCCC 1943 Query 22534 CAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCC 22593 | ||||| || ||||| || || ||||| || || | | ||||| || |||| || Sbjct 1944 TAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTAAAAGCGAATTCCTCACTCC 2003 Query 22594 GTGCTTTGAAATTTTACTCTTGAG--CATCGACCAGTCCCACAGATCGGACGGCGTCACA 22651 |||||| | || || ||||| | |||| ||| ||||||||||| | || | || Sbjct 2004 GTGCTTCGCGATCTTCCTCTTCAATTCATC--CCAATCCCACAGATCTGTTGGTTTAAC- 2060 Query 22652 TTGTCCCACATATCGTATTG 22671 || |||||| || ||||| Sbjct 2061 --GTTCCACATGTCATATTG 2078 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/183 (72%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 23005 AACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGT 23064 ||||||| ||||||| || || || || | |||||| || || || || | |||| Sbjct 2607 AACAAACATGTTGACAGCAATAGATGCTAAATTGCACACAGCAACTTCTCCA--GGACCA 2664 Query 23065 G--TACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCT-CTG 23121 | || || |||||||| ||||| ||||||||||| || || ||||| | | |||| || Sbjct 2665 GAATATTCAACAATTTCAGTACACAGATTGCTACATTTGATAGTGCCTATA-TGCTGGTG 2723 Query 23122 GTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTG 23181 || ||||||||| || ||| || || ||||| || || || || ||||| || || Sbjct 2724 ATTCGATTTTCGATTACATTGATCTTTATAAAGCATATAAGGTGTTCCAGTCTCTACTTG 2783 Query 23182 CGA 23184 || Sbjct 2784 GGA 2786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445698777237120