Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq6771 136 4e-27
seq10678 122 8e-23
seq7200 111 1e-19
seq9711 100 3e-16
seq10234 93.3 4e-14
>seq6771
Length=7421
Score = 136 bits (150), Expect = 4e-27
Identities = 158/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || |||||||| ||||| || || ||||| |||||| |||| |||||| | ||
Sbjct 94 CATGCAGATCTTCGTAAAAACTCTCACTGGTAAAACTATCACCCTCGAAGTTGAAGCTTC 153
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | | || | |||||| | || ||||| |||||| | || || || ||
Sbjct 154 AGACACTATAGAGAATGTCAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCAGATCA 213
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||||||||||| || ||||||||||| | ||||| | ||| | ||| |||||
Sbjct 214 GCAGCGTCTAATTTTTGCTGGCAAACAACTTGAAGATGGCAGAACTCTTTCCGACTATAA 273
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| || || ||||| || ||||||||||| ||
Sbjct 274 CATCCAGAAGGAATCTACGCTTCATCTGGTTCT 306
Score = 116 bits (128), Expect = 3e-21
Identities = 148/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || |||||||| ||||| || || ||||| |||||| | || |||||| | ||
Sbjct 322 CATGCAGATCTTCGTAAAAACTCTCACCGGTAAAACTATCACCCTTGAAGTTGAAGCTTC 381
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|| | | | || | || ||| | ||| |||||| || || | || || || ||
Sbjct 382 GGATACTATAGAGAACGTGAAAGCTAAAATCCAGGACAAAGAGGGAATTCCCCCGGATCA 441
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||||||||||| ||||||||||||||| | ||||| | |||| | ||||| ||
Sbjct 442 ACAGCGTCTAATTTTCGCTGGCAAACAGCTTGAAGATGGCAGGACTCTTTCAGATTACAA 501
Query 31372 CATTCAAAAAGAATCGACTCTTCA 31395
||| ||||| ||||| || || ||
Sbjct 502 CATCCAAAAGGAATCAACACTCCA 525
>seq10678
Length=68604
Score = 122 bits (134), Expect = 8e-23
Identities = 136/182 (75%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 57669 GAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAAC 57728
|| ||| | ||||| || || ||||| ||||||||||| || |||||||||||||||
Sbjct 45309 GAAAGATACTTTATCTCTCATGTCTTGGCATTTTTCGCCGCTTCTGATGGTATTGTTAAC 45368
Query 57729 GAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTAC 57788
|||||| || | |||||||| || || ||| |||| | || || | || || |||
Sbjct 45369 GAGAATCTGATTGAAAGATTCAGTCAGGAGGTGAAAGTCGCTGAAGCACGTTGTTTCTAC 45428
Query 57789 GGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACG 57848
|| || ||| ||||||| || || | ||||| ||||||||||| | ||||| || ||
Sbjct 45429 GGCTTCCAAATGGCCATAGAGAATATTCATTCCGAAATGTATTCTTTGCTCATTGAAACT 45488
Query 57849 TA 57850
||
Sbjct 45489 TA 45490
Score = 100 bits (110), Expect = 3e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 57957 GCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGC 58016
|| |||||| | || | ||||||| ||||| || ||||| ||||| ||||| |||
Sbjct 45787 GCTACGTTCCCAGAACGTGTAATCGCATTCGCGGCAGTCGAGGGTATTTTCTTCAGCGGC 45846
Query 58017 AGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGC 58076
|| ||||| || ||||||||| |||| ||||| || | ||||| || || || ||||||
Sbjct 45847 AGTTTTGCAGCGATATTTTGGCTGAAAAAACGAGGAGTCATGCCAGGTCTTACTTTTAGC 45906
Query 58077 AACGAGTTGATATCGCGCGACGA 58099
||||| | || ||||| || ||
Sbjct 45907 AACGAACTCATCTCGCGGGATGA 45929
Score = 84.2 bits (92), Expect = 2e-11
Identities = 87/114 (76%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 57510 GAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGAC 57569
|| ||||| ||||| || ||| | | || || || ||||| ||| ||||||| ||
Sbjct 44852 GAGCCACTGTTGCAGGAAGGTCCAAATCGTTTCGTAATTTTTCCTATTCAATATCCTGAT 44911
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTA 57623
|| ||| | ||||| |||||||| | ||||||||||||||| | |||||||||
Sbjct 44912 ATCTGGGATATGTATAAAAAGGCTGTAGCATCGTTTTGGACTATAGAAGAAGTA 44965
>seq7200
Length=105881
Score = 111 bits (122), Expect = 1e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| |||||||| ||||| |||| || || || || || | || ||||| | ||
Sbjct 104685 ATGCAGATTTTCGTGAAGACGTTGACTGGAAAGACCATAACTCTTGAGGTTGAGGCTTCT 104744
Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | |||| | || ||| || ||| | |||||| |||||| | || || |||||
Sbjct 104745 GACACTATCGAGAACGTGAAAGCAAAGATTCA-GGACAAAGAAGGCATCCCACCTGACCA 104803
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||||||| | || || ||||| |||||| | |||||| || || || || ||
Sbjct 104804 GCAGCGTTTGATCTTTGCTGGAAAACAGCTTGAAGACGGACGTACCTTGTCTGACTACAA 104863
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|| ||||| |||||||||||||| |||| ||| || | | |||||
Sbjct 104864 TATCCAAAAGGAATCGACTCTTCACTTGGTTCTTCGATTACGTGGCGG 104911
Score = 89.7 bits (98), Expect = 5e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| ||||| || || ||||| ||||| ||||| ||||| | || || || | ||
Sbjct 105141 ATGCAGATTTTTGTCAAAACTCTCACAGGAAAAACCATCACATTGGAAGTCGAGGCTTCG 105200
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||||| |||||| | ||| || |||||||| | || || || |||
Sbjct 105201 GACACGATCGAAAACGTCAAAGCAAAAATTCAAGATAAGGAAGGAATTCCTCCGGATCAG 105260
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| | | || || ||||||||||| | || ||| | || | ||||| |||
Sbjct 105261 CAAAGATTGATCTTTGCTGGCAAACAACTTGAGGACGGTCGCACACTTTCTGATTACAAC 105320
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|||||||||||||| || | ||| | || || || || | || ||||
Sbjct 105321 ATTCAAAAAGAATCAACGTTGCATTTAGTTCTCCGATTGCGTGGTGGTA 105369
Score = 89.7 bits (98), Expect = 5e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| || || || |||| || || || ||||| | || |||||| ||||
Sbjct 105369 ATGCAAATTTTTGTTAAAACATTGACGGGAAAGACCATCACATTGGAGGTTGAAGCGTCA 105428
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | |||||| | ||| ||| |||||||| | || || || |||
Sbjct 105429 GACACGATCGAGAACGTCAAAGCCAAAATTCAGGATAAGGAAGGAATCCCACCGGATCAG 105488
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | | || ||||| || || ||| | || ||| || | |||||||||
Sbjct 105489 CAGAGGTTGATCTTCGCCGGAAAGCAGCTAGAGGACGGCCGCACGCTTTCAGATTATAAC 105548
Query 31373 ATTCAAAAAGAATCGAC 31389
|||||||||||||| ||
Sbjct 105549 ATTCAAAAAGAATCAAC 105565
>seq9711
Length=151070
Score = 100 bits (110), Expect = 3e-16
Identities = 153/215 (71%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| ||||| || || ||||| || |||||||| || || | || |||||| | ||
Sbjct 103792 ATGCAGATTTTTGTTAAAACTCTCACTGGCAAAACCATTACATTGGAGGTTGAAGCTTCG 103851
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | |||| |||||| | ||| || |||||||| | || || || |||
Sbjct 103852 GACACAATTGAAAATGTCAAAGCCAAAATTCAAGATAAGGAAGGAATCCCTCCGGATCAG 103911
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA---CTCTATGACTATGAGCGATTAT 31369
||| | |||| |||||||| ||||| ||||||| | || ||| | ||| ||
Sbjct 103912 CAGAGATTAATCTTCGCTGGAAAACAACTGGAAGATGGCCGTAC-ACTTTC--CGACTAC 103968
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|||||||| ||||||||||| | ||| |||| ||
Sbjct 103969 AACATTCAGAAAGAATCGACCTTGCATTTGGTTCT 104003
Score = 98.7 bits (108), Expect = 9e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| || || |||| || || || ||||| | || |||||| ||||
Sbjct 104020 ATGCAAATTTTCGTCAAAACCTTGACGGGAAAGACCATCACATTGGAGGTTGAAGCGTCA 104079
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | |||||| | ||| ||| |||||||| | || || || |||
Sbjct 104080 GACACGATCGAGAACGTCAAAGCCAAAATTCAGGATAAGGAAGGAATCCCACCGGATCAG 104139
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | | || ||||| || || ||| | || ||| || | |||||||||
Sbjct 104140 CAGAGGTTGATCTTCGCCGGAAAGCAGCTAGAGGACGGCCGCACGCTTTCAGATTATAAC 104199
Query 31373 ATTCAAAAAGAATCGACTCTTCAT 31396
||||| |||||||| ||||| |||
Sbjct 104200 ATTCAGAAAGAATCCACTCTGCAT 104223
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || |||||| | || |||||||| || || | || || || | ||
Sbjct 104248 ATGCAGATATTTGTCAAGACTTTAACTGGCAAAACTATAACACTAGAGGTCGAGGCTTCG 104307
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | || || || ||| ||||| || ||| | || ||||| |||
Sbjct 104308 GACACAATCGAGAACGTGAAGGCGAAAATTCAAGACAAAGAGGGCATTCCTCCCGATCAG 104367
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| | || || |||||||||||||| | || ||| ||| || ||| || ||
Sbjct 104368 CAAAGACTGATTTTCGCTGGCAAACAACTCGAGGACGGACGAACTTTGTCCGACTACAAT 104427
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|||||||||||||| || || || || |||||| |||| || || ||
Sbjct 104428 ATTCAAAAAGAATCCACACTCCACCTTGTACTTCGACTTAGAGGTGG 104474
>seq10234
Length=192330
Score = 93.3 bits (102), Expect = 4e-14
Identities = 178/260 (68%), Gaps = 7/260 (3%)
Strand=Plus/Plus
Query 22414 CCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCC 22473
||| || || |||| ||||||||| | |||||| | || || | |||||| ||
Sbjct 1824 CCATAATCCTCTGGCAGTCAAATCTCGTAGCAGATGCGGATTGACGATGACAAACTCTCC 1883
Query 22474 GGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCC 22533
|| || ||||| | ||| || ||| ||| ||||||| | ||||| || || ||
Sbjct 1884 AGATAATACGCGCCTCACGTAGATATTGCTCGTGTACGGTTCAATGGATTCGTTATTCCC 1943
Query 22534 CAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCC 22593
| ||||| || ||||| || || ||||| || || | | ||||| || |||| ||
Sbjct 1944 TAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTAAAAGCGAATTCCTCACTCC 2003
Query 22594 GTGCTTTGAAATTTTACTCTTGAG--CATCGACCAGTCCCACAGATCGGACGGCGTCACA 22651
|||||| | || || ||||| | |||| ||| ||||||||||| | || | ||
Sbjct 2004 GTGCTTCGCGATCTTCCTCTTCAATTCATC--CCAATCCCACAGATCTGTTGGTTTAAC- 2060
Query 22652 TTGTCCCACATATCGTATTG 22671
|| |||||| || |||||
Sbjct 2061 --GTTCCACATGTCATATTG 2078
Score = 87.8 bits (96), Expect = 2e-12
Identities = 132/183 (72%), Gaps = 6/183 (3%)
Strand=Plus/Plus
Query 23005 AACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGT 23064
||||||| ||||||| || || || || | |||||| || || || || | ||||
Sbjct 2607 AACAAACATGTTGACAGCAATAGATGCTAAATTGCACACAGCAACTTCTCCA--GGACCA 2664
Query 23065 G--TACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCT-CTG 23121
| || || |||||||| ||||| ||||||||||| || || ||||| | | |||| ||
Sbjct 2665 GAATATTCAACAATTTCAGTACACAGATTGCTACATTTGATAGTGCCTATA-TGCTGGTG 2723
Query 23122 GTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTG 23181
|| ||||||||| || ||| || || ||||| || || || || ||||| || ||
Sbjct 2724 ATTCGATTTTCGATTACATTGATCTTTATAAAGCATATAAGGTGTTCCAGTCTCTACTTG 2783
Query 23182 CGA 23184
||
Sbjct 2784 GGA 2786
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445698777237120
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