Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq10593 100 6e-16 >seq10593 Length=94130 Score = 100 bits (110), Expect = 6e-16 Identities = 161/227 (71%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 35225 CCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTC 35284 ||| | || || ||||||| | | |||||| ||| ||| || || ||||| |||||| Sbjct 2421 CCATTACTGACAACCAAGAGAGTATTCTGGCGAGCAGTAGTTGAGGAACTGCTGTGGTTT 2362 Query 35285 ATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGAAGAAGATA--CACATCTGGAACG 35342 |||| || ||| || | ||||| ||| | ||| ||| | || || ||| | | Sbjct 2361 ATCAAAGGATCAACAAACTCGAAAGAGTTGAC--AGATAAAGGTGTTCATATTTGGGATG 2304 Query 35343 CTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATAC-GATAGAGCAGAGGGAGAT 35401 ||||| ||||||| || |||||| | |||| || ||||| | |||||| ||| Sbjct 2303 AGAATGGTTCGCGGGCTTTCTTGGACTCCT-ATGGTTTCACTGATAGGGAAGAGGGCGAT 2245 Query 35402 TTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATA 35448 |||||||| || || || ||||| ||||| || ||||| || ||||| Sbjct 2244 TTGGGACCTGTCTATGGTTTCCAGTGGCGGCACTTTGGCGCCGAATA 2198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989430127109880