Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq10234 134 2e-26 seq5599 104 3e-17 seq10678 102 1e-16 >seq10234 Length=192330 Score = 134 bits (148), Expect = 2e-26 Identities = 227/320 (71%), Gaps = 14/320 (4%) Strand=Plus/Plus Query 62788 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62847 |||| |||||||| ||||| | |||||| ||| | ||||| ||||||||| |||||| Sbjct 2462 TACCAATAGGTCTGTGTCTTTGATTAGATGTTTTCGTCTCTGGGATAGGATAAAAATTAA 2521 Query 62848 TATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGA 62904 || || | ||||| ||||| | |||||||| |||| | || || ||||| Sbjct 2522 CGTCAATGACTTTATCTAGATTGCGGGTGACAATT--TTTG-CGACTGTTTTAAGTTTAT 2578 Query 62905 GAAAATCAAATCGCCC---ATCT--ATTA-CAAACATGTTCAATGCAACAGATGCCAGAT 62958 ||||||||| | |||| |||| |||||||||| | |||| |||||| | || Sbjct 2579 CAAAATCAAAAGTCTTGGTATCTGTATTAACAAACATGTTGACAGCAATAGATGCTAAAT 2638 Query 62959 TACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 63018 | ||||| || || || || | | | ||||| | || ||||| || ||||| |||| Sbjct 2639 TGCACACAGCAACTTCTCCAGGACCAGAATATTCAACAATTTCAGTACACAGATTGCTAC 2698 Query 63019 ACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG-TTACACGCATCCTTATAAAGA 63077 | |||||||| |||| || || ||||| | |||| | ||||| ||| |||||||| Sbjct 2699 ATTTGATAGTGCCTATATGCTGGTGATT-CGATTTTCGATTACATTGATCTTTATAAAGC 2757 Query 63078 ATGAATGGAGTACCAGTTTC 63097 || | || || ||||| || Sbjct 2758 ATATAAGGTGTTCCAGTCTC 2777 Score = 129 bits (142), Expect = 7e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 63669 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGT 63727 || ||||||| || || ||||| |||||||| || |||||| || || ||||||||| Sbjct 3603 GCGTTAAATAGTGTTGGTGAAGCATGCGTAAAATATCGTTCAGACAAATA-ATTGTACGT 3661 Query 63728 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 63787 ||| |||||| ||| || || || ||||| || || || || | ||| ||||| || Sbjct 3662 CTCTATAGCTTTGTCAATGTCATTTTCGTGAATACCAACAGCCACTCTCATCAACATATG 3721 Query 63788 CTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 63847 ||||| || ||||| |||||| || ||||||| || ||| | | || | ||||| Sbjct 3722 TTGAGGCCTCTCAACTATTTTGCCATTAATTTTCAGCAGATAGCTTCTCTCGAGTGTTTT 3781 Query 63848 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAAT 63897 |||||||| ||| || || |||||||| || || || ||| | |||| Sbjct 3782 AAAACCAATATAATTATAATTGAAGTCTCGATCATATATTATAGCAGAAT 3831 Score = 89.7 bits (98), Expect = 6e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 62331 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACT 62390 || || |||| ||||||| ||| | || ||| ||| || |||||||| || || | Sbjct 1813 ATATCTTCATCCCATAATCCTCTGGCAGTCAAATCTCGTAGCAGATGCGGATTGACGATG 1872 Query 62391 TGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGAC 62450 || |||||||| ||||| | || ||| ||||| || || |||||||| | || Sbjct 1873 ACAAACTCTCCAGATAATACGCGCCTCACGTAGATATTGCTCGTGTACGGTTCAATGGAT 1932 Query 62451 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 62497 || ||||| || ||||| || || || || || || ||||||||||| Sbjct 1933 TCGTTATTCCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGC 1979 >seq5599 Length=16320 Score = 104 bits (114), Expect = 3e-17 Identities = 109/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 ||||||| | || |||||||||||||| ||||| |||||||| ||||| || |||| Sbjct 13214 CACTAAAGACCTTCTTTGTTTCCTTGTGCAGATTGGATATGGCAATTCTAGCTGCTAAGG 13155 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACA-AGTGGCTGCTATTTCGGCTGCCAGAGTGTCC 64124 | || ||||| ||||| || || | || ||| || || |||| ||||||| | | ||| Sbjct 13154 TTGCGTAATCTGGATGCTG-GTTGATCATAGTTGCCGCAGTTTCAGCTGCCAAATTATCC 13096 Query 64125 AATTCTACCGTTGTTACTCCA 64145 ||||| | |||||||||||| Sbjct 13095 AATTCGATAGTTGTTACTCCA 13075 Score = 82.4 bits (90), Expect = 1e-10 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 62622 CCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCA 62681 ||| |||||| ||||| || |||| | |||||| || ||||| || |||| ||| Sbjct 14997 CCTTCATATGACTCATAAGGACCTTTTTGGGCAGCTATTTCGCAACTAGCTTCTAGAGCA 14938 Query 62682 CCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAAT 62741 || ||||||| || ||||| || | || || | | || || |||| |||||| Sbjct 14937 CCATAATAAAGAGTCTCAAAAATTTGGACGTTGAGTTTATTAGCCTCTTGGCTTTCAAAT 14878 Query 62742 GGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACC 62791 ||||| | | | || ||||| || ||||| ||||| ||||||||||| Sbjct 14877 GGATATCTCATTAAGATGAACGCATCTGCTAACCCTTGTACACCAATACC 14828 >seq10678 Length=68604 Score = 102 bits (112), Expect = 1e-16 Identities = 165/235 (70%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 33831 TTTTCATTACTATCTTTAACATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAA 33888 ||||| || ||| ||| |||||| || || | ||||| ||||||||| ||||||| Sbjct 45511 TTTTCTTTTGGATCGGTAATATAAGTTTCAATGAGCAAAGA--ATACATTTCGGAATGAA 45454 Query 33889 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTG 33948 | || || |||||||| || || ||||||||||| | || || | | | ||| || Sbjct 45453 TATTCTCTATGGCCATTTGGAAGCCGTAGAAACAACGTGCTTCAGCGACTTTCACCTCCT 45394 Query 33949 TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCA 34008 || |||| ||| | ||| || || || || |||||| || || ||||| |||| Sbjct 45393 GACTGAATCTTTCAATCAGATTCTCGTTAACAATACCATCAGAAGCGGCGAAAAATGCCA 45334 Query 34009 ATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT---ATTCCAATCATT 34060 | ||||| ||||| ||| ||||||| | ||||||| || |||||| || Sbjct 45333 AGACATGAGAGATAAAGTATCTTTCGTCGGAACTTAGTTTTTCATCCCAATCCTT 45279 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 |||||||| | |||||||| ||||| | |||||||||||||||| |||||| ||| || Sbjct 44964 ACTTCTTCTATAGTCCAAAACGATGCTACAGCCTTTTTATACATATCCCAGATATCAGGA 44905 Query 34140 TATTGGATTGGGAAAATAACAAATCTATTTGGA 34172 ||||| || || ||||| || || | ||||||| Sbjct 44904 TATTGAATAGGAAAAATTACGAAACGATTTGGA 44872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629722056670080