Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq10234 120 3e-22 seq10678 111 1e-19 seq5599 104 2e-17 >seq10234 Length=192330 Score = 120 bits (132), Expect = 3e-22 Identities = 155/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 37143 AAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTC 37202 ||| |||||||||||||| | || || |||||||| || || ||||||||||| || Sbjct 1875 AAACTCTCCAGATAATACGCGCCTCACGTAGATATTGCTCGTGTACGGTTCAATGGATTC 1934 Query 37203 ATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATT 37262 ||||| | ||| || || | || || || || ||||| |||||||||| ||| ||| Sbjct 1935 GTTATTCCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTAAAAGCGAATT 1994 Query 37263 TCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG 37322 |||| ||| || | || || | || | ||||| ||||||||| | ||||||||| Sbjct 1995 CCTCACTCCGTGCTTCGCGATCTTCCTCTTCAATTCATCCCAATCCCACAGATCTGTTGG 2054 Query 37323 GTT--CTTTAACCACATATCATATTGTAGAAT 37352 || | || |||||| |||||||| || || Sbjct 2055 TTTAACGTT--CCACATGTCATATTGGAGGAT 2084 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 38418 GGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGT 38477 ||||||||||| ||| || || ||||| | || || ||| ||||||||||| || || Sbjct 3602 GGCGTTAAATAGTGTTGGTGAAGCATGCGTAAAATATCGTTCAGACAAATAATTGTACGT 3661 Query 38478 TTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATG 38537 ||||| | | || || ||| |||||||||| | || || ||||| | |||||| Sbjct 3662 CTCTATAGCTTTGTCAATGTCATTTTCGTGAATACCAACAGCCACTCTCATCAACATATG 3721 Query 38538 TTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTT 38597 ||| || || || | |||||| ||| ||| || ||||| | | || | |||||| Sbjct 3722 TTGAGGCCTCTCAACTATTTTGCCATTAATTTTCAGCAGATAGCTTCTCTCGAGTGTTTT 3781 Query 38598 TATTCCAAAATAACTATA--TGAATAATCTCTATCGTAT 38634 | |||| |||| |||| ||| | |||| ||| ||| Sbjct 3782 AAAACCAATATAATTATAATTGA--AGTCTCGATCATAT 3818 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 37404 AGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATT 37463 ||||| ||| ||||||||||||| || ||||||| | || || || |||| ||| || Sbjct 2218 AGCTAATTCACAACTAGATTCTAAGGCACCATAATAGAGCGTCTCAAAGATTTTTATGTT 2277 Query 37464 TAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAA 37523 | |||||||||| ||| ||||| | ||| | || ||||| |||| ||||||| | Sbjct 2278 GAGCTCCTTTGCTTCTTTGCTCTCGAAAGGATATCGCATTAATAGAAACGCATCAGCTAG 2337 Query 37524 ACCCTGAACACCGATACCTA 37543 ||| || | |||||||||| Sbjct 2338 ACCTTGTATTCCGATACCTA 2357 Score = 86.0 bits (94), Expect = 6e-12 Identities = 87/112 (78%), Gaps = 1/112 (1%) Strand=Plus/Plus Query 38097 TCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTG 38155 ||||||||| || |||||| || |||||||| |||||||| |||| |||||| | | | Sbjct 3220 TCTTAAGCTCTAAAAAATCAAAAATATCAGCATGCCATGGCTCTAAATAAATAGCAAACG 3279 Query 38156 CTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATA 38207 ||||||||||||| | ||||| |||| || ||| | || | | |||||| Sbjct 3280 CTCCTGGTCTTTTGTTTCCTCCTTGATCAACATAAACAGCTATTTCATTATA 3331 >seq10678 Length=68604 Score = 111 bits (122), Expect = 1e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 11432 ACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGAC 11491 ||||||||| | ||||| | |||||||| ||||| || ||||| ||||| | | || Sbjct 46293 ACTTTTTCAAATCCTAATGCAACGAATAATCTGTCTGCAACAAATTCGATATAGTTACAC 46234 Query 11492 ATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTT 11551 || | |||||||| ||||| || || ||||| | || |||||||| |||||| Sbjct 46233 ATGAGTGTGCAATTCATGCCTATCAGCTCGACCGGCAACGCCTGCGTCAAAAATTCCTTT 46174 Query 11552 TCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAAT 11611 || || | || ||||| || || || || ||| | ||| || || |||| Sbjct 46173 TCGATTTCCACAGCATCCATTATGATTGATTTTACACGTTCAAATGACGGCTTTTGTACA 46114 Query 11612 AAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACC 11652 | ||||||||||||||||| |||||||| || ||||| || Sbjct 46113 ATGTGTTTAAACATTAAACATGCAAAATCGCAGTGTAATCC 46073 Score = 105 bits (116), Expect = 6e-18 Identities = 152/211 (72%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 11899 ATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAA 11958 ||| || || || | ||| ||||||||| ||||||||||| || || || ||||| || Sbjct 45491 ATAAGTTTCAATGAGCAAAGAATACATTTCGGAATGAATATTCTCTATGGCCATTTGGAA 45432 Query 11959 TCCATAGAAACATCGTGCCTCTGAACACTGT-ACATCCACATAAAATCTTTCCGCTAAAT 12017 || |||||||| ||||| || | ||| | || ||| | |||||||| | || Sbjct 45431 GCCGTAGAAACAACGTGCTTCAG-CGACTTTCACCTCCTGACTGAATCTTTCAATCAGAT 45373 Query 12018 TCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATT 12077 |||| || |||||||||||| || || |||||||| | | ||| ||||||||| Sbjct 45372 TCTCGTTAACAATACCATCAGAAGCGGCGAAAAATGCCAAGACATGAGAGATAAAGTATC 45313 Query 12078 TTTCGTCTTTAGTTAATTT---ATCCCAATC 12105 ||||||| | ||| ||| ||||||||| Sbjct 45312 TTTCGTCGGAACTTAGTTTTTCATCCCAATC 45282 >seq5599 Length=16320 Score = 104 bits (114), Expect = 2e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 37353 ACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTT---AGCTAG 37409 ||||||||| |||| | | ||||| ||||||||| || | ||| ||||| Sbjct 15016 ACCTTTACTGACTGGGCTGCCTTCATATGACTCATAAGGACCTT---TTTGGGCAGCTAT 14960 Query 37410 TTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATAT 37469 ||||||||||| |||||| || ||||||| | || || |||||||| | || | | | Sbjct 14959 TTCGCAACTAGCTTCTAGAGCACCATAATAAAGAGTCTCAAAAATTTGGACGTTGAGTTT 14900 Query 37470 TTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTG 37529 || || |||| ||| || |||| ||| | || ||| || ||| |||| || || || || Sbjct 14899 ATTAGCCTCTTGGCTTTCAAATGGATATCTCATTAAGATGAACGCATCTGCTAACCCTTG 14840 Query 37530 AACACCGATACCTA 37543 ||||| ||||||| Sbjct 14839 TACACCAATACCTA 14826 Score = 82.4 bits (90), Expect = 7e-11 Identities = 143/206 (69%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 38440 GCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCA 38499 ||||||| || | | || |||| || |||||||||||| || || | ||| || || Sbjct 13614 GCATGTACAAAGTAGTGTTTTGACATATTATTATATGTTTCAATAACCTTATCAATGTCT 13555 Query 38500 CCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTA 38559 | ||||||||||||| || || | ||| | |||||| || || ||||| | | ||| Sbjct 13554 TCACCGTGAATACCTACAGCCACTCGCATCAACATATGCTGCGGCCTTTCAACAACTTTT 13495 Query 38560 TTATTCTGTTTAAGTAGATACGATTTTTCTAATG--TTTTTATTCCAAAATAACTATATG 38617 |||| |||| | | | |||| ||| | | |||| | | || ||||||||| Sbjct 13494 CCATTCAGTTTCA--ACAAGTGATTACTCTCAAGCATTTTAAATGTAACATAACTATAAT 13437 Query 38618 AATAATCTCTATCGTATGCTATTACA 38643 | |||||||||| ||| |||| || Sbjct 13436 TAAAATCTCTATCATATATTATTGCA 13411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468453724787840