Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq10234 131 2e-25
seq5599 98.7 1e-15
seq10678 96.9 5e-15
>seq10234
Length=192330
Score = 131 bits (144), Expect = 2e-25
Identities = 226/320 (71%), Gaps = 14/320 (4%)
Strand=Plus/Plus
Query 65581 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 65640
|||| |||||||| ||||| | |||||| ||| | ||||| ||||||||| ||||||
Sbjct 2462 TACCAATAGGTCTGTGTCTTTGATTAGATGTTTTCGTCTCTGGGATAGGATAAAAATTAA 2521
Query 65641 TATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGA 65697
|| || | ||||| ||||| | |||||||| |||| | || || |||||
Sbjct 2522 CGTCAATGACTTTATCTAGATTGCGGGTGACAATT--TTTG-CGACTGTTTTAAGTTTAT 2578
Query 65698 GAAAATCAAATCGCTC---ATCT--ATTA-CAAACATGTTCAATGCAACAGATGCCAGAT 65751
||||||||| || |||| |||| |||||||||| | |||| |||||| | ||
Sbjct 2579 CAAAATCAAAAGTCTTGGTATCTGTATTAACAAACATGTTGACAGCAATAGATGCTAAAT 2638
Query 65752 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 65811
| || || || || || || | | | ||||| | || ||||| || ||||| ||||
Sbjct 2639 TGCACACAGCAACTTCTCCAGGACCAGAATATTCAACAATTTCAGTACACAGATTGCTAC 2698
Query 65812 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG-TTACACGCATCCTTATAAAGA 65870
| ||||| || |||| || || ||||| | |||| | ||||| ||| ||||||||
Sbjct 2699 ATTTGATAGTGCCTATATGCTGGTGATT-CGATTTTCGATTACATTGATCTTTATAAAGC 2757
Query 65871 ATGAATGGAGTACCAGTTTC 65890
|| | || || ||||| ||
Sbjct 2758 ATATAAGGTGTTCCAGTCTC 2777
Score = 122 bits (134), Expect = 1e-22
Identities = 181/254 (71%), Gaps = 2/254 (1%)
Strand=Plus/Plus
Query 66462 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGT 66520
|| ||||||| || || ||||| |||||||| || |||||| || || |||||||||
Sbjct 3603 GCGTTAAATAGTGTTGGTGAAGCATGCGTAAAATATCGTTCAGACAAATA-ATTGTACGT 3661
Query 66521 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 66580
||| |||||| ||| || || || ||||| || || || || | ||| ||||| ||
Sbjct 3662 CTCTATAGCTTTGTCAATGTCATTTTCGTGAATACCAACAGCCACTCTCATCAACATATG 3721
Query 66581 CTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 66640
||||| || ||||| || ||| || ||||||| || ||| | | || | |||||
Sbjct 3722 TTGAGGCCTCTCAACTATTTTGCCATTAATTTTCAGCAGATAGCTTCTCTCGAGTGTTTT 3781
Query 66641 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATC 66700
|||||||| ||| || || |||||||| || || || ||| | || | ||| | ||
Sbjct 3782 AAAACCAATATAATTATAATTGAAGTCTCGATCATATATTATAGCAGAATCCAGTCTCTC 3841
Query 66701 CTTATATTTGTTAA 66714
| || || ||||
Sbjct 3842 CGCATTATTCTTAA 3855
Score = 98.7 bits (108), Expect = 1e-15
Identities = 122/167 (73%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 65124 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 65183
|| || |||| ||||||| ||| | || ||| ||| || ||||||||||| || |
Sbjct 1813 ATATCTTCATCCCATAATCCTCTGGCAGTCAAATCTCGTAGCAGATGCGGATTGACGATG 1872
Query 65184 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 65243
||| |||||||| ||||| | || ||| ||||| || || |||||||| | ||
Sbjct 1873 ACAAACTCTCCAGATAATACGCGCCTCACGTAGATATTGCTCGTGTACGGTTCAATGGAT 1932
Query 65244 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 65290
|| ||||| || ||||| || || || || || || |||||||||||
Sbjct 1933 TCGTTATTCCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGC 1979
>seq5599
Length=16320
Score = 98.7 bits (108), Expect = 1e-15
Identities = 108/141 (77%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858
||||||| | || |||||||| ||||| ||||| |||| ||| |||||||| ||||
Sbjct 13214 CACTAAAGACCTTCTTTGTTTCCTTGTGCAGATTGGATATGGCAATTCTAGCTGCTAAGG 13155
Query 66859 TGGCATAATCCGGATGTTGTGTAGTACA-AGTGGCTGCTATTTCGGCTGCCAGAGTGTCC 66917
| || ||||| ||||| || || | || ||| || || |||| ||||||| | | |||
Sbjct 13154 TTGCGTAATCTGGATGCTG-GTTGATCATAGTTGCCGCAGTTTCAGCTGCCAAATTATCC 13096
Query 66918 AATTCTACCGTTGTTACTCCA 66938
||||| | ||||||||||||
Sbjct 13095 AATTCGATAGTTGTTACTCCA 13075
>seq10678
Length=68604
Score = 96.9 bits (106), Expect = 5e-15
Identities = 77/93 (83%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 36656 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 36715
|||||||| | |||||||| ||||| | |||||||||||||||| |||||| ||| ||
Sbjct 44964 ACTTCTTCTATAGTCCAAAACGATGCTACAGCCTTTTTATACATATCCCAGATATCAGGA 44905
Query 36716 TATTGAATTGGAAAAATAACAAATCTATTTTGA 36748
|||||||| |||||||| || || | |||| ||
Sbjct 44904 TATTGAATAGGAAAAATTACGAAACGATTTGGA 44872
Score = 93.3 bits (102), Expect = 6e-14
Identities = 163/235 (69%), Gaps = 7/235 (3%)
Strand=Plus/Minus
Query 36407 TTTTCATTACTATCTTTAACATATGTATCAATCA--AAAGACTATACATTTCCGAATGAA 36464
||||| || ||| ||| ||| || ||||| | ||||| ||||||||| |||||||
Sbjct 45511 TTTTCTTTTGGATCGGTAATATAAGTTTCAATGAGCAAAGA--ATACATTTCGGAATGAA 45454
Query 36465 TGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTG 36524
| || || ||||||||||| || ||||||||||| | || || | | | || ||
Sbjct 45453 TATTCTCTATGGCCATTTGGAAGCCGTAGAAACAACGTGCTTCAGCGACTTTCACCTCCT 45394
Query 36525 TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 36584
|| |||| ||| | ||| || || || || || ||| || || ||||| ||||
Sbjct 45393 GACTGAATCTTTCAATCAGATTCTCGTTAACAATACCATCAGAAGCGGCGAAAAATGCCA 45334
Query 36585 ATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTT---ATTCCAATCATT 36636
| ||||| ||||| ||| |||||| | ||||||| || |||||| ||
Sbjct 45333 AGACATGAGAGATAAAGTATCTTTCGTCGGAACTTAGTTTTTCATCCCAATCCTT 45279
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658072955186240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |