Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq10234 131 2e-25 seq5599 98.7 1e-15 seq10678 96.9 5e-15 >seq10234 Length=192330 Score = 131 bits (144), Expect = 2e-25 Identities = 226/320 (71%), Gaps = 14/320 (4%) Strand=Plus/Plus Query 65581 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 65640 |||| |||||||| ||||| | |||||| ||| | ||||| ||||||||| |||||| Sbjct 2462 TACCAATAGGTCTGTGTCTTTGATTAGATGTTTTCGTCTCTGGGATAGGATAAAAATTAA 2521 Query 65641 TATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGA 65697 || || | ||||| ||||| | |||||||| |||| | || || ||||| Sbjct 2522 CGTCAATGACTTTATCTAGATTGCGGGTGACAATT--TTTG-CGACTGTTTTAAGTTTAT 2578 Query 65698 GAAAATCAAATCGCTC---ATCT--ATTA-CAAACATGTTCAATGCAACAGATGCCAGAT 65751 ||||||||| || |||| |||| |||||||||| | |||| |||||| | || Sbjct 2579 CAAAATCAAAAGTCTTGGTATCTGTATTAACAAACATGTTGACAGCAATAGATGCTAAAT 2638 Query 65752 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 65811 | || || || || || || | | | ||||| | || ||||| || ||||| |||| Sbjct 2639 TGCACACAGCAACTTCTCCAGGACCAGAATATTCAACAATTTCAGTACACAGATTGCTAC 2698 Query 65812 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG-TTACACGCATCCTTATAAAGA 65870 | ||||| || |||| || || ||||| | |||| | ||||| ||| |||||||| Sbjct 2699 ATTTGATAGTGCCTATATGCTGGTGATT-CGATTTTCGATTACATTGATCTTTATAAAGC 2757 Query 65871 ATGAATGGAGTACCAGTTTC 65890 || | || || ||||| || Sbjct 2758 ATATAAGGTGTTCCAGTCTC 2777 Score = 122 bits (134), Expect = 1e-22 Identities = 181/254 (71%), Gaps = 2/254 (1%) Strand=Plus/Plus Query 66462 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGT 66520 || ||||||| || || ||||| |||||||| || |||||| || || ||||||||| Sbjct 3603 GCGTTAAATAGTGTTGGTGAAGCATGCGTAAAATATCGTTCAGACAAATA-ATTGTACGT 3661 Query 66521 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 66580 ||| |||||| ||| || || || ||||| || || || || | ||| ||||| || Sbjct 3662 CTCTATAGCTTTGTCAATGTCATTTTCGTGAATACCAACAGCCACTCTCATCAACATATG 3721 Query 66581 CTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 66640 ||||| || ||||| || ||| || ||||||| || ||| | | || | ||||| Sbjct 3722 TTGAGGCCTCTCAACTATTTTGCCATTAATTTTCAGCAGATAGCTTCTCTCGAGTGTTTT 3781 Query 66641 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATC 66700 |||||||| ||| || || |||||||| || || || ||| | || | ||| | || Sbjct 3782 AAAACCAATATAATTATAATTGAAGTCTCGATCATATATTATAGCAGAATCCAGTCTCTC 3841 Query 66701 CTTATATTTGTTAA 66714 | || || |||| Sbjct 3842 CGCATTATTCTTAA 3855 Score = 98.7 bits (108), Expect = 1e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 65124 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 65183 || || |||| ||||||| ||| | || ||| ||| || ||||||||||| || | Sbjct 1813 ATATCTTCATCCCATAATCCTCTGGCAGTCAAATCTCGTAGCAGATGCGGATTGACGATG 1872 Query 65184 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 65243 ||| |||||||| ||||| | || ||| ||||| || || |||||||| | || Sbjct 1873 ACAAACTCTCCAGATAATACGCGCCTCACGTAGATATTGCTCGTGTACGGTTCAATGGAT 1932 Query 65244 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 65290 || ||||| || ||||| || || || || || || ||||||||||| Sbjct 1933 TCGTTATTCCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGC 1979 >seq5599 Length=16320 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 ||||||| | || |||||||| ||||| ||||| |||| ||| |||||||| |||| Sbjct 13214 CACTAAAGACCTTCTTTGTTTCCTTGTGCAGATTGGATATGGCAATTCTAGCTGCTAAGG 13155 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACA-AGTGGCTGCTATTTCGGCTGCCAGAGTGTCC 66917 | || ||||| ||||| || || | || ||| || || |||| ||||||| | | ||| Sbjct 13154 TTGCGTAATCTGGATGCTG-GTTGATCATAGTTGCCGCAGTTTCAGCTGCCAAATTATCC 13096 Query 66918 AATTCTACCGTTGTTACTCCA 66938 ||||| | |||||||||||| Sbjct 13095 AATTCGATAGTTGTTACTCCA 13075 >seq10678 Length=68604 Score = 96.9 bits (106), Expect = 5e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 36656 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 36715 |||||||| | |||||||| ||||| | |||||||||||||||| |||||| ||| || Sbjct 44964 ACTTCTTCTATAGTCCAAAACGATGCTACAGCCTTTTTATACATATCCCAGATATCAGGA 44905 Query 36716 TATTGAATTGGAAAAATAACAAATCTATTTTGA 36748 |||||||| |||||||| || || | |||| || Sbjct 44904 TATTGAATAGGAAAAATTACGAAACGATTTGGA 44872 Score = 93.3 bits (102), Expect = 6e-14 Identities = 163/235 (69%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 36407 TTTTCATTACTATCTTTAACATATGTATCAATCA--AAAGACTATACATTTCCGAATGAA 36464 ||||| || ||| ||| ||| || ||||| | ||||| ||||||||| ||||||| Sbjct 45511 TTTTCTTTTGGATCGGTAATATAAGTTTCAATGAGCAAAGA--ATACATTTCGGAATGAA 45454 Query 36465 TGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTG 36524 | || || ||||||||||| || ||||||||||| | || || | | | || || Sbjct 45453 TATTCTCTATGGCCATTTGGAAGCCGTAGAAACAACGTGCTTCAGCGACTTTCACCTCCT 45394 Query 36525 TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 36584 || |||| ||| | ||| || || || || || ||| || || ||||| |||| Sbjct 45393 GACTGAATCTTTCAATCAGATTCTCGTTAACAATACCATCAGAAGCGGCGAAAAATGCCA 45334 Query 36585 ATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTT---ATTCCAATCATT 36636 | ||||| ||||| ||| |||||| | ||||||| || |||||| || Sbjct 45333 AGACATGAGAGATAAAGTATCTTTCGTCGGAACTTAGTTTTTCATCCCAATCCTT 45279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658072955186240