Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq10234 118 2e-21 seq5599 107 3e-18 seq10678 96.9 5e-15 >seq10234 Length=192330 Score = 118 bits (130), Expect = 2e-21 Identities = 178/253 (70%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 80341 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTC 80400 || ||||||| || || ||||| |||||||| || |||||||| |||||||||| Sbjct 3603 GCGTTAAATAGTGTTGGTGAAGCATGCGTAAAATATCGTTCAGACAAATAATTGTACGTC 3662 Query 80401 TCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGC 80460 || |||||| || || || || ||||| || || || || | ||| ||||| || Sbjct 3663 TCTATAGCTTTGTCAATGTCATTTTCGTGAATACCAACAGCCACTCTCATCAACATATGT 3722 Query 80461 TGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTA 80520 ||||| || ||||| || ||| ||| ||||||| || || | | || | |||||| Sbjct 3723 TGAGGCCTCTCAACTATTTTGCCATTAATTTTCAGCAGATAGCTTCTCTCGAGTGTTTTA 3782 Query 80521 AAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCC 80580 ||||||| ||| || || |||||||| || || || ||| | || | ||| | ||| Sbjct 3783 AAACCAATATAATTATAATTGAAGTCTCGATCATATATTATAGCAGAATCCAGTCTCTCC 3842 Query 80581 TTATATTTGTTAA 80593 || || |||| Sbjct 3843 GCATTATTCTTAA 3855 Score = 116 bits (128), Expect = 5e-21 Identities = 222/320 (69%), Gaps = 14/320 (4%) Strand=Plus/Plus Query 79460 TACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 79519 |||| |||||||| ||||| | |||||| ||| | ||||| ||||||||| |||||| Sbjct 2462 TACCAATAGGTCTGTGTCTTTGATTAGATGTTTTCGTCTCTGGGATAGGATAAAAATTAA 2521 Query 79520 TATCTATAATTTTATTGAGATTCC---TGACTATTACTTTGACCACATCCTTTAGTTTGA 79576 || || | ||||| ||||| | |||| ||| |||| | || || ||||| Sbjct 2522 CGTCAATGACTTTATCTAGATTGCGGGTGACAATT--TTTG-CGACTGTTTTAAGTTTAT 2578 Query 79577 GAAAATCAAA-----TCGTCCATCTATTA-CAAACATGTTCAACGCGACAGATGCCAGAT 79630 ||||||||| | || | ||||| |||||||||| | || | |||||| | || Sbjct 2579 CAAAATCAAAAGTCTTGGTATCTGTATTAACAAACATGTTGACAGCAATAGATGCTAAAT 2638 Query 79631 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTAC 79690 | || || || || || || | | | ||||| | |||||||| || || || |||| Sbjct 2639 TGCACACAGCAACTTCTCCAGGACCAGAATATTCAACAATTTCAGTACACAGATTGCTAC 2698 Query 79691 ACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTG-TTACACGCATCCTTATAAAGA 79749 | || || || |||| || || ||||| | |||| | ||||| ||| |||||||| Sbjct 2699 ATTTGATAGTGCCTATATGCTGGTGATT-CGATTTTCGATTACATTGATCTTTATAAAGC 2757 Query 79750 ATGAACGGAGTACCAGTTTC 79769 || | || || ||||| || Sbjct 2758 ATATAAGGTGTTCCAGTCTC 2777 Score = 113 bits (124), Expect = 6e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 79003 ATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 79062 || ||||||| ||||||| ||| | || ||| ||| || ||||||||||| || | Sbjct 1813 ATATCTTCATCCCATAATCCTCTGGCAGTCAAATCTCGTAGCAGATGCGGATTGACGATG 1872 Query 79063 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGAT 79122 ||| |||||||| ||||| | || ||| ||||| || || || ||||| | ||| Sbjct 1873 ACAAACTCTCCAGATAATACGCGCCTCACGTAGATATTGCTCGTGTACGGTTCAATGGAT 1932 Query 79123 TCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGC 79169 || ||||| || ||||| || || || || ||||||||||||||||| Sbjct 1933 TCGTTATTCCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGC 1979 >seq5599 Length=16320 Score = 107 bits (118), Expect = 3e-18 Identities = 110/141 (78%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 ||||||| | || |||||||||||||| ||||| |||| ||| ||||| || ||||| Sbjct 13214 CACTAAAGACCTTCTTTGTTTCCTTGTGCAGATTGGATATGGCAATTCTAGCTGCTAAGG 13155 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACA-AGTGGCTGCTATTTCGGCTGCCAGAGTGTCC 80796 | || ||||||||||| || || | || ||| || || |||| ||||||| | | ||| Sbjct 13154 TTGCGTAATCTGGATGCTG-GTTGATCATAGTTGCCGCAGTTTCAGCTGCCAAATTATCC 13096 Query 80797 AATTCTACCGTTGTTACTCCA 80817 ||||| | |||||||||||| Sbjct 13095 AATTCGATAGTTGTTACTCCA 13075 Score = 89.7 bits (98), Expect = 7e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 |||| |||||||| |||| | | |||| ||| ||||| || |||| || || ||| Sbjct 14991 TATGACTCATAAGGACCTTTTTGGGCAGCTATTTCGCAACTAGCTTCTAGAGCACCATAA 14932 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 |||| || || ||||| | ||||| | | || ||| |||| ||||||||||| Sbjct 14931 TAAAGAGTCTCAAAAATTTGGACGTTGAGTTTATTAGCCTCTTGGCTTTCAAATGGATAT 14872 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 79463 | | | || ||||| |||||||| ||||| ||||||||||| Sbjct 14871 CTCATTAAGATGAACGCATCTGCTAACCCTTGTACACCAATACC 14828 >seq10678 Length=68604 Score = 96.9 bits (106), Expect = 5e-15 Identities = 164/235 (70%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 50209 TTTTCATTACTATCTTTAACATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAA 50266 ||||| || ||| ||| |||||| || || | ||||| ||||||||| ||||||| Sbjct 45511 TTTTCTTTTGGATCGGTAATATAAGTTTCAATGAGCAAAGA--ATACATTTCGGAATGAA 45454 Query 50267 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTG 50326 | || || |||||||| || || ||||||||||| | || || | | | ||| || Sbjct 45453 TATTCTCTATGGCCATTTGGAAGCCGTAGAAACAACGTGCTTCAGCGACTTTCACCTCCT 45394 Query 50327 TACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 50386 || |||| |||| | ||| || || || || || ||| || || ||||| |||| Sbjct 45393 GACTGAATCTTTCAATCAGATTCTCGTTAACAATACCATCAGAAGCGGCGAAAAATGCCA 45334 Query 50387 ATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTT---ATTCCAATCATT 50438 | ||||| ||||| | | |||||| || ||||||| || |||||| || Sbjct 45333 AGACATGAGAGATAAAGTATCTTTCGTCGGAACTTAGTTTTTCATCCCAATCCTT 45279 Score = 93.3 bits (102), Expect = 6e-14 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516 ||||||||| | |||||||| ||||| | |||||||||||||||| |||||| ||| | Sbjct 44965 TACTTCTTCTATAGTCCAAAACGATGCTACAGCCTTTTTATACATATCCCAGATATCAGG 44906 Query 50517 ATATTGGATTGGGAAAATAACAAATCTATTTGGA 50550 |||||| || || ||||| || || | ||||||| Sbjct 44905 ATATTGAATAGGAAAAATTACGAAACGATTTGGA 44872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718159838623040