Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq10678 84.2 2e-11 >seq10678 Length=68604 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 13908 ATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATT 13967 || |||||||| ||| || | |||||||| | |||||||||||| | ||||||||| Sbjct 45917 ATGAGTTCGTTGCTAAAAGTAAGACCTGGCATGACTCCTCGTTTTTTCAGCCAAAATATC 45858 Query 13968 GCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCT 14027 || ||||| ||| ||||| || ||||| ||||| || || || |||| |||||| Sbjct 45857 GCTGCAAAACTGCCGCTGAAGAAAATACCCTCGACTGCCGCGAATGCGATTACACGTTCT 45798 Query 14028 CCAAACGATGCTTTTTTGTTCGAT--ATCCATTTTCTAGCCCATTCAGAtttttttttAA 14085 |||| || | | | ||| ||||| || ||||| | || ||| ||| | Sbjct 45797 GGGAACGTAGCACTCTCAT--GATTGATCCAATTCAATGCCCAATTAGCTTTCTTTCCTA 45740 Query 14086 TAAAATCCATTGTTTCAATAGCATTAAATAAA 14117 | || | || ||||| |||||||||||| Sbjct 45739 CAGAAGGAAGCGTCTCAATCGCATTAAATAAA 45708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479655225262400