Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq10234 140 4e-28 seq10678 111 2e-19 seq5599 104 3e-17 >seq10234 Length=192330 Score = 140 bits (154), Expect = 4e-28 Identities = 229/320 (72%), Gaps = 14/320 (4%) Strand=Plus/Plus Query 71543 TACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 71602 |||| |||||||||||||| | |||||| ||| | ||||| ||||||||| |||||| Sbjct 2462 TACCAATAGGTCTGTGTCTTTGATTAGATGTTTTCGTCTCTGGGATAGGATAAAAATTAA 2521 Query 71603 TATCTATAATTTTATTGAGATTTC---TGACTATTACTTTGACCACATCCTTTAGTTTGA 71659 || || | ||||| ||||| | |||| ||| |||| | || || ||||| Sbjct 2522 CGTCAATGACTTTATCTAGATTGCGGGTGACAATT--TTTG-CGACTGTTTTAAGTTTAT 2578 Query 71660 GAAAATCAAA--TC-TCCCATC--TATT-ACAAACACGTTCAAGGCAACAGATGCCAGAT 71713 ||||||||| || | ||| |||| ||||||| ||| | |||| |||||| | || Sbjct 2579 CAAAATCAAAAGTCTTGGTATCTGTATTAACAAACATGTTGACAGCAATAGATGCTAAAT 2638 Query 71714 TACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTAC 71773 | || || || || || || | | | ||||| | ||||||||| || ||||| |||| Sbjct 2639 TGCACACAGCAACTTCTCCAGGACCAGAATATTCAACAATTTCAGTACACAGATTGCTAC 2698 Query 71774 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG-TTACACGCATCCTTATAAAGA 71832 | ||||| || |||| || || ||||| | |||| | ||||| ||| |||||||| Sbjct 2699 ATTTGATAGTGCCTATATGCTGGTGATT-CGATTTTCGATTACATTGATCTTTATAAAGC 2757 Query 71833 ATAAACGGAGTACCAGTTTC 71852 ||| | || || ||||| || Sbjct 2758 ATATAAGGTGTTCCAGTCTC 2777 Score = 127 bits (140), Expect = 3e-24 Identities = 180/253 (71%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 72424 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTC 72483 || ||||||| || || ||||| |||||||| || |||||||| |||||||||| Sbjct 3603 GCGTTAAATAGTGTTGGTGAAGCATGCGTAAAATATCGTTCAGACAAATAATTGTACGTC 3662 Query 72484 TCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGC 72543 || |||||| || || || || || || || || || || | ||| |||||||| Sbjct 3663 TCTATAGCTTTGTCAATGTCATTTTCGTGAATACCAACAGCCACTCTCATCAACATATGT 3722 Query 72544 TGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTA 72603 ||||| || ||||| || ||| ||| ||||||| || ||| | | || | |||||| Sbjct 3723 TGAGGCCTCTCAACTATTTTGCCATTAATTTTCAGCAGATAGCTTCTCTCGAGTGTTTTA 3782 Query 72604 AAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCC 72663 ||||||| ||| || || |||||||| || || || ||| | |||| ||| | ||| Sbjct 3783 AAACCAATATAATTATAATTGAAGTCTCGATCATATATTATAGCAGAATCCAGTCTCTCC 3842 Query 72664 TTATATTTGTTAA 72676 || || |||| Sbjct 3843 GCATTATTCTTAA 3855 Score = 96.9 bits (106), Expect = 5e-15 Identities = 126/173 (73%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 71081 TTTTG-ATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 71139 ||||| || ||||||| ||||||| ||| | || ||| ||| || ||||| ||||| Sbjct 1807 TTTTGCATATCTTCATCCCATAATCCTCTGGCAGTCAAATCTCGTAGCAGATGCGGATTG 1866 Query 71140 ACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCC 71199 || | ||| |||||||| ||||| | | ||| ||||| || || |||||||| Sbjct 1867 ACGATGACAAACTCTCCAGATAATACGCGCCTCACGTAGATATTGCTCGTGTACGGTTCA 1926 Query 71200 ACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 71252 | || || ||||| || ||||| || || || || || || ||||||||||| Sbjct 1927 ATGGATTCGTTATTCCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGC 1979 >seq10678 Length=68604 Score = 111 bits (122), Expect = 2e-19 Identities = 81/94 (86%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 42562 TACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATG 42621 ||||||||||| |||||||| |||||| | |||||||||||||||| |||||||||| | Sbjct 44965 TACTTCTTCTATAGTCCAAAACGATGCTACAGCCTTTTTATACATATCCCAGATATCAGG 44906 Query 42622 ATATTGAATTGGGAAAATAACAAATCTATTTGGA 42655 ||||||||| || ||||| || || | ||||||| Sbjct 44905 ATATTGAATAGGAAAAATTACGAAACGATTTGGA 44872 Score = 96.9 bits (106), Expect = 5e-15 Identities = 164/235 (70%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 42314 TTTTCATTACTATCTTTAACATATGTATCGATCA--AAAGACTATACATTTCTGAATGAA 42371 ||||| || ||| ||| ||| || || || | ||||| ||||||||| ||||||| Sbjct 45511 TTTTCTTTTGGATCGGTAATATAAGTTTCAATGAGCAAAGA--ATACATTTCGGAATGAA 45454 Query 42372 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTG 42431 | || || |||||||| || || ||||||||||| | || || | || | || || Sbjct 45453 TATTCTCTATGGCCATTTGGAAGCCGTAGAAACAACGTGCTTCAGCGACTTTCACCTCCT 45394 Query 42432 TACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 42491 || |||| |||| | ||| ||||| || || || ||| || || ||||| |||| Sbjct 45393 GACTGAATCTTTCAATCAGATTCTCGTTAACAATACCATCAGAAGCGGCGAAAAATGCCA 45334 Query 42492 ATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTT---ATTCCAATCATT 42543 | ||||| ||||| ||| ||||||| | ||| ||| || |||||| || Sbjct 45333 AGACATGAGAGATAAAGTATCTTTCGTCGGAACTTAGTTTTTCATCCCAATCCTT 45279 >seq5599 Length=16320 Score = 104 bits (114), Expect = 3e-17 Identities = 109/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 ||||||| | || |||||||||||||| ||||| |||| ||| ||||| || |||| Sbjct 13214 CACTAAAGACCTTCTTTGTTTCCTTGTGCAGATTGGATATGGCAATTCTAGCTGCTAAGG 13155 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACA-AGTGGCTGCTATTTCTGCTGCCAGAGTGTCC 72879 | || ||||||||||| || || | || ||| || || |||| ||||||| | | ||| Sbjct 13154 TTGCGTAATCTGGATGCTG-GTTGATCATAGTTGCCGCAGTTTCAGCTGCCAAATTATCC 13096 Query 72880 AATTCTACCGTTGTTACTCCA 72900 ||||| | |||||||||||| Sbjct 13095 AATTCGATAGTTGTTACTCCA 13075 Score = 86.0 bits (94), Expect = 8e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 71377 CCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCT 71436 ||| |||||| || || || |||| || | |||| ||| ||||| || |||| || Sbjct 14997 CCTTCATATGACTCATAAGGACCTTTTTGGGCAGCTATTTCGCAACTAGCTTCTAGAGCA 14938 Query 71437 CCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAAT 71496 |||||||||| || || ||||| | ||||| | | || || |||| |||||| Sbjct 14937 CCATAATAAAGAGTCTCAAAAATTTGGACGTTGAGTTTATTAGCCTCTTGGCTTTCAAAT 14878 Query 71497 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACC 71546 ||||| | | | || ||||| |||||||| ||||| || |||||||| Sbjct 14877 GGATATCTCATTAAGATGAACGCATCTGCTAACCCTTGTACACCAATACC 14828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671037388183360