Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq7200 122 9e-23 seq6771 114 1e-20 seq9711 104 2e-17 >seq7200 Length=105881 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || || || | ||||||||| | || ||||||||||| ||||||||||| Sbjct 105367 CCACCACGCAATCGGAGAACTAAATGCAACGTTGATTCTTTTTGAATGTTGTAATCAGAA 105308 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| ||| || |||||||| |||||| |||||| | ||||||||| ||||| Sbjct 105307 AGTGTGCGACCGTCCTCAAGTTGTTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAGGA 105248 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || ||||||| ||| | | ||| | |||||||| | || ||| Sbjct 105247 ATTCCTTCCTTATCTTGAATTTTTGCTTTGACGTTTTCGATCGTGTCCGAAGCCTCGACT 105188 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || || || | ||||| || || || ||||| Sbjct 105187 TCCAATGTGATGGTTTTTCCTGTGAGAGTTTTGACAAAAATCTGCAT 105141 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || ||||| || | ||| || |||| || ||||| ||||| || ||||| || | Sbjct 104911 CCGCCACGTAATCGAAGAACCAAGTGAAGAGTCGATTCCTTTTGGATATTGTAGTCAGAC 104852 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | |||||| || ||||| |||||| |||||| ||| ||||| || || || Sbjct 104851 AAGGTACGTCCGTCTTCAAGCTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCAGGTGGG 104792 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| ||| ||| ||| | | || | ||||| | | || || Sbjct 104791 ATGCCTTCTTTGTCCTGAATCTTTGCTTTCACGTTCTCGATAGTGTCAGAAGCCTCAACC 104732 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAG 143186 |||| ||| | ||||| || ||||| || || ||||| || ||||||| Sbjct 104731 TCAAGAGTTATGGTCTTTCCAGTCAACGTCTTCACGAAAATCTGCATAG 104683 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || ||||| | ||| ||||| | || |||||||| || || ||||| || Sbjct 105823 CCACCACGCAAACGGAGAACCAAATGCAAGGTTGATTCTTTCTGAATATTGTAGTCAGAA 105764 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | ||||| || ||||| || ||| |||| | | || ||||| ||||| Sbjct 105763 AGTGTACGACCATCTTCCAGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGAGGG 105704 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || |||||| ||| | | ||| | |||||||| | || ||| Sbjct 105703 ATTCCTTCCTTATCCTGAATTTTGGCTTTGACATTTTCGATCGTGTCCGATGCCTCAACT 105644 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| || ||||||||||| ||||| ||||||||| Sbjct 105643 TCCAATGTAATGGTCTTTCCAGTCAATGTTTTAACGAAAATTTGCATA 105596 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || ||||| | ||||||||| | || ||||||||||| ||||| ||||| Sbjct 105595 CCACCACGCAAACGGAGAACTAAATGCAACGTTGATTCTTTTTGAATGTTATAATCTGAA 105536 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||| || || || || || || |||||| | |||||||| || || Sbjct 105535 AGCGTGCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGG 105476 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || |||||| ||| | | || | |||||| | | ||| || Sbjct 105475 ATTCCTTCCTTATCCTGAATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAACC 105416 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| || ||||||||||| || || ||||||||| Sbjct 105415 TCCAATGTGATGGTCTTTCCCGTCAATGTTTTAACAAAAATTTGCATA 105368 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || ||||| | ||| ||||| | || ||||| ||||| || || ||||| | Sbjct 105139 CCACCACGCAAACGAAGAACCAAATGCAAGGTTGATTCCTTTTGAATATTATAATC--TG 105082 Query 143018 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | | | ||| || || ||||| || |||||| |||||| | |||||||| || | Sbjct 105081 AGAGAGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGTG 105022 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | ||||||||||| || |||||| ||| | | || | ||| || | | |||| Sbjct 105021 GGATGCCTTCTTTATCTTGAATTTTCGCTTTGACATTCTCAATCGTATCAGAAGCCTCTA 104962 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || | ||| | ||||| || |||| ||||| || || || ||||| Sbjct 104961 CCTCCAAAGTGATGGTCTTTCCAGTCAGGGTTTTAACAAAAATCTGCAT 104913 >seq6771 Length=7421 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | ||||| ||| | ||||| |||||||| || || ||||| || ||| Sbjct 322 GCCTCCGCGAAGACGCAGAACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCGGA 263 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || || ||||| |||||||| |||||| | || ||||| |||||||| ||||| Sbjct 262 AAGAGTTCTGCCATCTTCAAGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGAGG 203 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||||||||| || || ||| | | || | ||||| | | ||| || Sbjct 202 AATGCCTTCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATAGTGTCTGAAGCTTCAAC 143 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | || | || || || || | ||||||||||| || ||||| Sbjct 142 TTCGAGGGTGATAGTTTTACCAGTGAGAGTTTTTACGAAGATCTGCAT 95 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | ||||||||||| || | ||| ||||| ||||| ||||||||||| Sbjct 550 GCCTCCGCGAAGTCGCAAAACTAAGTGGAGTGTTGATTCCTTTTGGATGTTGTAATCTGA 491 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || || ||||| || ||||| ||||| | || ||||| || ||||| || || Sbjct 490 AAGAGTCCTGCCATCTTCAAGCTGTTTGCCAGCGAAAATTAGACGCTGTTGATCCGGGGG 431 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || |||||||| ||||| ||| | | || | || |||| | ||| || Sbjct 430 AATTCCCTCTTTGTCCTGGATTTTAGCTTTCACGTTCTCTATAGTATCCGAAGCTTCAAC 371 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| || | || || ||||| | ||||||||||| || ||||| Sbjct 370 TTCAAGGGTGATAGTTTTACCGGTGAGAGTTTTTACGAAGATCTGCAT 323 >seq9711 Length=151070 Score = 104 bits (114), Expect = 2e-17 Identities = 144/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 142987 TGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACC 143046 ||| ||||||||||| || ||||| ||| || || | ||| ||||||||||| || Sbjct 104445 TGTGGATTCTTTTTGAATATTGTAGTCGGACAAAGTTCGTCCGTCCTCGAGTTGTTTGCC 104386 Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 ||| | ||||| | ||||||||||||||| ||||| |||||||| |||||| || Sbjct 104385 AGCGAAAATCAGTCTTTGCTGATCGGGAGGAATGCCCTCTTTGTCTTGAATTTTCGCCTT 104326 Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 | | || | ||||||| | || || || | || | || ||||| || || || Sbjct 104325 CACGTTCTCGATTGTGTCCGAAGCCTCGACCTCTAGTGTTATAGTTTTGCCAGTTAAAGT 104266 Query 143167 TTTTACGAATATTTGCATAGCT 143188 || || ||||| |||||| || Sbjct 104265 CTTGACAAATATCTGCATACCT 104244 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | | |||||||||||| | || |||||||| || ||||| ||||| Sbjct 104246 CCTCCACGAAGCCTCAAAACTAAATGCAGAGTGGATTCTTTCTGAATGTTATAATCTGAA 104187 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||| || || || || || || |||||| | |||||||| || || Sbjct 104186 AGCGTGCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGG 104127 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || |||||| ||| | | || | |||||| | | ||| || Sbjct 104126 ATTCCTTCCTTATCCTGAATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAACC 104067 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| || ||||| ||||| ||||| ||||||||| Sbjct 104066 TCCAATGTGATGGTCTTTCCCGTCAAGGTTTTGACGAAAATTTGCATA 104019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506937485915520