Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_004456.1 Length=43198 Score E Sequences producing significant alignments: (Bits) Value seq8165 114 4e-21 >seq8165 Length=1351 Score = 114 bits (126), Expect = 4e-21 Identities = 391/599 (65%), Gaps = 19/599 (3%) Strand=Plus/Plus Query 31160 CGTCCGGTGGACTTCAAGCTGGACGACCCGACCTGTCGTGCCAACCTGCTGAACGCGAAG 31219 ||| || | |||||| || ||| ||| | | || ||||||||||||||| | | Sbjct 40 CGTGCGATCGACTTCGGTCTCTCCGATGCGAGCAGCCGCGCCAACCTGCTGAAC-CAATC 98 Query 31220 GAA-GTGACCACGACCATTCAGCAAAATGGTTTCCGTGTCTGGGGTGACCGCACTTGTTC 31278 ||| ||| | || | ||| | || ||| ||||| | ||||| |||| || | Sbjct 99 GAACGTGGCGACCATCATCCGCGAAGGTGGCTTCCGCCTGTGGGGCAACCGTACCGC--C 156 Query 31279 TGC--CGACTCTAAGTGGGCATTCAAGAACGTGGTCATTACTAACGACATGATCGCGGAC 31336 || |||| |||||| ||| | ||||| ||| |||||| || || ||| Sbjct 157 AGCAGCGACCAGAAGTGGCAGTTCCTGTGTGTGGTGCGCACTGCCGACATCATTGCCGAC 216 Query 31337 AGCCTGGTTCGCAACCACCTGTGGGCGGTTGACCGCAACATCACCAAGACCTACGTCGAA 31396 ||||| | | ||| |||||||| || |||||| ||||| ||||||||||||||| Sbjct 217 AGCCTCGAGGCCGCCCATCTGTGGGCCGTCGACCGCGGCATCAGCAAGACCTACGTCGAC 276 Query 31397 GACGTGACGGAAGGGGTGAATAACTACCTGCGCCACCTCAAAAACATCGGTGCGATTGCC 31456 |||||| || || || ||| || ||||||| ||| || | | |||||||| | Sbjct 277 GACGTGCGTGAGGGTGTCAATGCCTTCCTGCGCGGCCTGAAGACCCAGGGTGCGATCCTC 336 Query 31457 GGTGGTGAGTGCTGGGTGGACCCGGAGCTGAACAGCCCCGACCAAATTCAACAGGGTAAA 31516 || || | |||||||| ||||| || |||||| | ||| | ||||| Sbjct 337 GGCGGCAACTGCTGGGTCGACCCCGACCTGAACGCAGCGGACAGCGTGGCCCAGGGCCGC 396 Query 31517 GTCTACTTCGATTATGACTTTAGC---GCCTACGCGCCTGCAGAGCACATCACGTTCCGC 31573 |||||| || | ||||| | | ||||| || | ||||| | || |||||| Sbjct 397 TTCTACTGGGACTTCGACTTCACCCCGACCTAC---CCGGGTGAGCAGCTGACCTTCCGC 453 Query 31574 AGCCACATGGTTAACGGCTATCTGACGGAGGTTGTGTAAG-ATGCTACCGCAAGTAATCC 31632 | |||||| ||| ||| | ||||| | | |||| ||| |||||| |||| Sbjct 454 ATGCACATGAACAACAACTACGTCTCGGAGATCTTCTAAGCATG-GCGCGCAAG--ATCC 510 Query 31633 GAGCAA---TGAACCTGTTTGCTGACGGTAAAGGCTATGCAGGTGTGGTGGAGGAAGTGA 31689 | || | || | | | ||||| || || ||||| || ||| | | | Sbjct 511 GCAAAAACTTCAATTTCTACGTCGACGGCAAGGGTTATGCCGGCAGCGTGATGACCTTCA 570 Query 31690 CCCCTCCAAAACTGACTCTCAAGACCGAGGAGTTCAAGGCAGGGGGCATGGACGCCCCG 31748 || |||| || ||||| || ||||||||||| ||| |||| || |||||| ||| ||| Sbjct 571 CCGCTCCCAAGCTGACGCTGAAGACCGAGGACTTCCAGGCCGGCGGCATGCTCGCACCG 629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138092095989120