Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_004456.1
Length=43198
Score E
Sequences producing significant alignments: (Bits) Value
seq8165 114 4e-21
>seq8165
Length=1351
Score = 114 bits (126), Expect = 4e-21
Identities = 391/599 (65%), Gaps = 19/599 (3%)
Strand=Plus/Plus
Query 31160 CGTCCGGTGGACTTCAAGCTGGACGACCCGACCTGTCGTGCCAACCTGCTGAACGCGAAG 31219
||| || | |||||| || ||| ||| | | || ||||||||||||||| | |
Sbjct 40 CGTGCGATCGACTTCGGTCTCTCCGATGCGAGCAGCCGCGCCAACCTGCTGAAC-CAATC 98
Query 31220 GAA-GTGACCACGACCATTCAGCAAAATGGTTTCCGTGTCTGGGGTGACCGCACTTGTTC 31278
||| ||| | || | ||| | || ||| ||||| | ||||| |||| || |
Sbjct 99 GAACGTGGCGACCATCATCCGCGAAGGTGGCTTCCGCCTGTGGGGCAACCGTACCGC--C 156
Query 31279 TGC--CGACTCTAAGTGGGCATTCAAGAACGTGGTCATTACTAACGACATGATCGCGGAC 31336
|| |||| |||||| ||| | ||||| ||| |||||| || || |||
Sbjct 157 AGCAGCGACCAGAAGTGGCAGTTCCTGTGTGTGGTGCGCACTGCCGACATCATTGCCGAC 216
Query 31337 AGCCTGGTTCGCAACCACCTGTGGGCGGTTGACCGCAACATCACCAAGACCTACGTCGAA 31396
||||| | | ||| |||||||| || |||||| ||||| |||||||||||||||
Sbjct 217 AGCCTCGAGGCCGCCCATCTGTGGGCCGTCGACCGCGGCATCAGCAAGACCTACGTCGAC 276
Query 31397 GACGTGACGGAAGGGGTGAATAACTACCTGCGCCACCTCAAAAACATCGGTGCGATTGCC 31456
|||||| || || || ||| || ||||||| ||| || | | |||||||| |
Sbjct 277 GACGTGCGTGAGGGTGTCAATGCCTTCCTGCGCGGCCTGAAGACCCAGGGTGCGATCCTC 336
Query 31457 GGTGGTGAGTGCTGGGTGGACCCGGAGCTGAACAGCCCCGACCAAATTCAACAGGGTAAA 31516
|| || | |||||||| ||||| || |||||| | ||| | |||||
Sbjct 337 GGCGGCAACTGCTGGGTCGACCCCGACCTGAACGCAGCGGACAGCGTGGCCCAGGGCCGC 396
Query 31517 GTCTACTTCGATTATGACTTTAGC---GCCTACGCGCCTGCAGAGCACATCACGTTCCGC 31573
|||||| || | ||||| | | ||||| || | ||||| | || ||||||
Sbjct 397 TTCTACTGGGACTTCGACTTCACCCCGACCTAC---CCGGGTGAGCAGCTGACCTTCCGC 453
Query 31574 AGCCACATGGTTAACGGCTATCTGACGGAGGTTGTGTAAG-ATGCTACCGCAAGTAATCC 31632
| |||||| ||| ||| | ||||| | | |||| ||| |||||| ||||
Sbjct 454 ATGCACATGAACAACAACTACGTCTCGGAGATCTTCTAAGCATG-GCGCGCAAG--ATCC 510
Query 31633 GAGCAA---TGAACCTGTTTGCTGACGGTAAAGGCTATGCAGGTGTGGTGGAGGAAGTGA 31689
| || | || | | | ||||| || || ||||| || ||| | | |
Sbjct 511 GCAAAAACTTCAATTTCTACGTCGACGGCAAGGGTTATGCCGGCAGCGTGATGACCTTCA 570
Query 31690 CCCCTCCAAAACTGACTCTCAAGACCGAGGAGTTCAAGGCAGGGGGCATGGACGCCCCG 31748
|| |||| || ||||| || ||||||||||| ||| |||| || |||||| ||| |||
Sbjct 571 CCGCTCCCAAGCTGACGCTGAAGACCGAGGACTTCCAGGCCGGCGGCATGCTCGCACCG 629
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 138092095989120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |