Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_004688.1 Length=110865 Score E Sequences producing significant alignments: (Bits) Value seq8096 100 2e-16 >seq8096 Length=1015 Score = 100 bits (110), Expect = 2e-16 Identities = 133/182 (73%), Gaps = 7/182 (4%) Strand=Plus/Plus Query 99387 GTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 99446 |||| |||||| ||||| || | || || ||| ||| |||||||||||||||| || Sbjct 118 GTTGGCCTTGATCAGGCCGGTGATGACGTCGACGCTGGGACGCTGCGTCGCCAGGATCAG 177 Query 99447 ATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAATGTTGGCCTCAACCTCTTT 99506 || ||||||||||| |||||||||||||| | |||| | ||| | || | | || Sbjct 178 GTGGATGCCGGCCGCGCGCGCCTTCTGCGCCAGGCGGGCGATGAGTTCTTCGATC---TT 234 Query 99507 CTTGTAGCCAC--CCATCATGAGATCAGCGAGTTCATCCACCACTACCACGATGTAGGGG 99564 |||| |||| ||||||| || || || || || || | || ||||||||| ||| Sbjct 235 CTTG--CCCACCACCATCATCAGGTCGGCCAGCTCGTCGATGACCACCACGATGGTGGGT 292 Query 99565 AG 99566 || Sbjct 293 AG 294 Score = 86.0 bits (94), Expect = 4e-12 Identities = 114/156 (73%), Gaps = 7/156 (4%) Strand=Plus/Plus Query 99762 AGGGGTCGCCCG-GTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTGCCCG 99820 ||| |||| || ||| |||||||| | | ||| | |||||| | |||||||||| Sbjct 576 AGGCGTCGGCCTTGTACAGCAGCGACAGGATCATGGCGTTGATCCCGACCGACTTGCCCG 635 Query 99821 ATCCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTAGCCAGGTTCAGGGAGATGTCC- 99879 | ||||| | ||| ||||||| ||| ||||||||||| ||||||| || | || Sbjct 636 ACCCGGTGGTGCCCGCCACCAACAGGTGCGGCATCTTGGCCAGGT---CGGCCACCACCG 692 Query 99880 --TTGCCCTCGACGTCCTTGCCCACTGCCACGGTCA 99913 ||||| ||| ||||||||||| |||| ||||| Sbjct 693 GATTGCCGGCGATGTCCTTGCCCAGCGCCATGGTCA 728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354590745610896