Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq7200 98.7 8e-16
seq9711 95.1 1e-14
>seq7200
Length=105881
Score = 98.7 bits (108), Expect = 8e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898
|||||||| || || |||||||| |||||||| | | ||| ||||||| || |||
Sbjct 105343 TGCAACGTTGATTCTTTTTGAATGTTGTAATCAGAAAGTGTGCGACCGTCCTCAAGTTGT 105284
Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958
|| || ||| | || | ||| ||||||||| || | || || || || ||||||
Sbjct 105283 TTGCCAGCAAAGATCAATCTTTGCTGATCCGGAGGAATTCCTTCCTTATCTTGAATTTTT 105224
Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018
||| || | ||| || || || ||| ||| | || |||||||| |||||
Sbjct 105223 GCTTTGACGTTTTCGATCGTGTCCGAAGCCTCGACTTCCAATGTGATGGTTTTTCCTGTG 105164
Query 19019 AAAGTTTTGACAAAAATTTGCATT 19042
| ||||||||||||||| ||||||
Sbjct 105163 AGAGTTTTGACAAAAATCTGCATT 105140
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872
|||| || ||||| | | |||| ||||| || || |||||||||||||| ||||| |
Sbjct 105141 TTCCACCACGCAAACGAAGAACCAAATGCAAGGTTGATTCCTTTTGAATATTATAATCTG 105082
Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932
| || | ||||| || || || || ||| | || | |||||||||||| |
Sbjct 105081 AGAGAGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGTG 105022
Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992
| | ||| ||||| || ||||||| ||| || | | | ||||| || |||
Sbjct 105021 GGATGCCTTCTTTATCTTGAATTTTCGCTTTGACATTCTCAATCGTATCAGAAGCCTCTA 104962
Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042
|| | || ||||| || || || | ||||| |||||||| ||||||
Sbjct 104961 CCTCCAAAGTGATGGTCTTTCCAGTCAGGGTTTTAACAAAAATCTGCATT 104912
>seq9711
Length=151070
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
|| || || |||||||||||||| || | || ||| ||||||| || ||||| ||
Sbjct 104444 GTGGATTCTTTTTGAATATTGTAGTCGGACAAAGTTCGTCCGTCCTCGAGTTGTTTGCCA 104385
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
|| |||| ||||| |||||||| || | |||||||||||| ||||||| ||
Sbjct 104384 GCGAAAATCAGTCTTTGCTGATCGGGAGGAATGCCCTCTTTGTCTTGAATTTTCGCCTTC 104325
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024
|| | ||| || || || ||| || | || || ||||| || ||||||||
Sbjct 104324 ACGTTCTCGATTGTGTCCGAAGCCTCGACCTCTAGTGTTATAGTTTTGCCAGTTAAAGTC 104265
Query 19025 TTGACAAAAATTTGCAT 19041
|||||||| || |||||
Sbjct 104264 TTGACAAATATCTGCAT 104248
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414511481573584
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |