Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq7200 87.8 1e-12 >seq7200 Length=105881 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| || | ||||| | || ||||| | ||| ||||||||||| || ||||| Sbjct 105368 ACCACCACGCAATCGGAGAACTAAATGCAACGTTGATTCTTTTTGAATGTTGTAATCAGA 105309 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | || | || || | |||||| || ||||| ||||| | |||||| ||| |||| Sbjct 105308 AAGTGTGCGACCGTCCTCAAGTTGTTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAGG 105249 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| |||||| ||||||| |||||| | | | || || | | ||| || Sbjct 105248 AATTCCTTCCTTATCTTGAATTTTTGCTTTGACGTTTTCGATCGTGTCCGAAGCCTCGAC 105189 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || || | ||| || ||||| || ||||| Sbjct 105188 TTCCAATGTGATGGTTTTTCCTGTGAGAGTTTTGACAAAAATCTGCAT 105141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354725125732128