Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq6771 89.7 4e-13 >seq6771 Length=7421 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||| || | | ||| || || || ||||| ||||| ||||| ||||||||||| Sbjct 549 CCTCCGCGAAGTCGCAAAACTAAGTGGAGTGTTGATTCCTTTTGGATGTTGTAATCTGAA 490 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | |||||| | |||||||| || |||| || | ||||||||| ||| Sbjct 489 AGAGTCCTGCCATCTTCAAGCTGTTTGCCAGCGAAAATTAGACGCTGTTGATCCGGGGGA 430 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | || |||||||| ||||| |||||| | | | || ||| || ||| | Sbjct 429 ATTCCCTCTTTGTCCTGGATTTTAGCTTTCACGTTCTCTATAGTATCCGAAGCTTCAACT 370 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | ||| || ||||| ||||| | ||||| || || || ||||| Sbjct 369 TCAAGGGTGATAGTTTTACCGGTGAGAGTTTTTACGAAGATCTGCAT 323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419525139906216