Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq6771 188 2e-42 seq7200 179 9e-40 seq9711 176 1e-38 seq10900 131 4e-25 seq10678 105 2e-17 seq9876 93.3 1e-13 >seq6771 Length=7421 Score = 188 bits (208), Expect = 2e-42 Identities = 169/212 (80%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | |||||||| ||||| || |||||||| || |||||||| || ||| Sbjct 306 AGAACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCGGAAAGAGTTCTGCCATCT 247 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || |||||||| |||||||||||||| | ||| ||||| ||||| || |||||||| || Sbjct 246 TCAAGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCT 187 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| ||||| ||||| |||| || || || ||| || || || || ||||| Sbjct 186 TGGATCTTAGCTTTGACATTCTCTATAGTGTCTGAAGCTTCAACTTCGAGGGTGATAGTT 127 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || |||||||| || |||||||| Sbjct 126 TTACCAGTGAGAGTTTTTACGAAGATCTGCAT 95 >seq7200 Length=105881 Score = 179 bits (198), Expect = 9e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| || || ||||||||||||||||| |||||||| || || | ||| ||| Sbjct 105808 AGAACCAAATGCAAGGTTGATTCTTTCTGAATATTGTAGTCAGAAAGTGTACGACCATCT 105749 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || |||||||| ||||| |||| |||||||||||| ||||| |||||||| |||||| Sbjct 105748 TCCAGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGAGGGATTCCTTCCTTATCC 105689 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || ||||| |||||||| | || || | || || || | |||||| ||| Sbjct 105688 TGAATTTTGGCTTTGACATTTTCGATCGTGTCCGATGCCTCAACTTCCAATGTAATGGTC 105629 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| | |||||| || || || ||||| Sbjct 105628 TTTCCAGTCAATGTTTTAACGAAAATTTGCAT 105597 Score = 165 bits (182), Expect = 2e-35 Identities = 165/214 (77%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| || || ||||| || ||||||||||| || || ||||| | ||| || Sbjct 105125 AAGAACCAAATGCAAGGTTGATTCCTTTTGAATATTATAATCTGAGAGAGTACGACCATC 105066 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || ||||| ||||||||||| || | ||||| ||||| || || || ||||||||||| Sbjct 105065 CTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATGCCTTCTTTATC 105006 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||| || ||||| ||||| || | ||||| || |||||||| | || || || Sbjct 105005 TTGAATTTTCGCTTTGACATTCTCAATCGTATCAGAAGCCTCTACCTCCAAAGTGATGGT 104946 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||| ||||| || ||||| ||||| ||||||||| Sbjct 104945 CTTTCCAGTCAGGGTTTTAACAAAAATCTGCATT 104912 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || |||| ||| || || |||||||| ||||| ||||| || || || || | ||||| Sbjct 105580 AGAACTAAATGCAACGTTGATTCTTTTTGAATGTTATAATCTGAAAGCGTGCGGCCGTCC 105521 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 ||||| || ||||| || || || | |||||| ||||| || || |||||||| |||||| Sbjct 105520 TCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCTTCCTTATCC 105461 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || ||||| || || || | || || | ||| ||||| | ||| || ||| Sbjct 105460 TGAATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAACCTCCAATGTGATGGTC 105401 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || | |||||| ||||| || ||||| Sbjct 105400 TTTCCCGTCAATGTTTTAACAAAAATTTGCAT 105369 Score = 136 bits (150), Expect = 9e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | ||| || | || | || ||||| || || ||||| |||||| Sbjct 104914 ATTCCGCCACGTAATCGAAGAACCAAGTGAAGAGTCGATTCCTTTTGGATATTGTAGTCA 104855 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | |||||||| || |||||||||||||| || | | ||| || ||||| Sbjct 104854 GACAAGGTACGTCCGTCTTCAAGCTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCAGGT 104795 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| ||||||||||||||||| || || || | || || || || Sbjct 104794 GGGATGCCTTCTTTGTCCTGAATCTTTGCTTTCACGTTCTCGATAGTGTCAGAAGCCTCA 104735 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| | || || || || |||||||| Sbjct 104734 ACCTCAAGAGTTATGGTCTTTCCAGTCAACGTCTTCACGAAAATCTGCAT 104685 >seq9711 Length=151070 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| || || |||||||||||||| || ||||| || || || | || ||| Sbjct 104003 AGAACCAAATGCAAGGTCGATTCTTTCTGAATGTTGTAGTCGGAAAGTGTACGGCCATCT 103944 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || |||||||||||||| || |||| ||||| ||||| ||||| |||||||| ||||| Sbjct 103943 TCCAGTTGTTTTCCAGCGAAGATTAATCTCTGCTGATCCGGAGGGATTCCTTCCTTATCT 103884 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || ||||| |||||||| | || || || ||| ||||| | |||||| || Sbjct 103883 TGAATTTTGGCTTTGACATTTTCAATTGTGTCCGAAGCTTCAACCTCCAATGTAATGGTT 103824 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || ||||| ||||| |||||||| Sbjct 103823 TTGCCAGTGAGAGTTTTAACAAAAATCTGCAT 103792 Score = 168 bits (186), Expect = 2e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| ||||| || | |||||| || || | ||| |||||||| |||||||| ||||| || Sbjct 104475 TCCACCTCTAAGTCGAAGTACAAGGTGGAGTGTGGATTCTTTTTGAATATTGTAGTCGGA 104416 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 | ||||| ||||| || |||||||| ||||| ||||| || || || ||||| ||||| Sbjct 104415 CAAAGTTCGTCCGTCCTCGAGTTGTTTGCCAGCGAAAATCAGTCTTTGCTGATCGGGAGG 104356 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 || || ||||| || ||||| || || || || || || | || || || || || Sbjct 104355 AATGCCCTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCCTCGAC 104296 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||||| ||||| || ||||| | || || |||||||||||||| Sbjct 104295 CTCTAGTGTTATAGTTTTGCCAGTTAAAGTCTTGACAAATATCTGCAT 104248 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| | |||| ||| | || |||||||||||||| ||||| || || || || | Sbjct 104237 AGCCTCAAAACTAAATGCAGAGTGGATTCTTTCTGAATGTTATAATCTGAAAGCGTGCGG 104178 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 ||||| ||||| || ||||| || || || | |||||| ||||| || || |||||||| Sbjct 104177 CCGTCCTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCTTCC 104118 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 ||||||||||| || ||||| || || || | || || | ||| ||||| | ||| Sbjct 104117 TTATCCTGAATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAACCTCCAATGTG 104058 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || | ||||| || || || ||||| Sbjct 104057 ATGGTCTTTCCCGTCAAGGTTTTGACGAAAATTTGCAT 104020 Score = 125 bits (138), Expect = 2e-23 Identities = 104/127 (82%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| | || | |||||| ||||| ||||||||||| || ||||| || || || | | Sbjct 103781 AGCCTCAAGACCAAATGTAACGTAGACTCTTTCTGAATGTTGTAGTCTGAAAGTGTACGA 103722 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| || |||||||| ||||| |||| |||||||||||| ||||| |||||||| Sbjct 103721 CCATCTTCCAGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGAGGGATTCCTTCC 103662 Query 104462 TTATCCT 104468 ||||||| Sbjct 103661 TTATCCT 103655 >seq10900 Length=227893 Score = 131 bits (144), Expect = 4e-25 Identities = 143/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 |||| ||||| || || || || || || | || || ||||||||||| ||||| || | Sbjct 197226 CTTTTTGAATGTTGTAATCTGAAAGGGTGCGTCCATCCTCTAGTTGTTTGCCAGCGAAGA 197285 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | || ||||| ||||| || || |||||||| |||||||||||||| || || || || | Sbjct 197286 TGAGTCTCTGCTGATCCGGTGGAATTCCTTCCTTATCCTGAATCTTAGCCTTGACGTTCT 197345 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 | | |||||| | || ||||| || || || |||||||| || || || || || | Sbjct 197346 CGATGGTATCAGAGGCCTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCACGA 197405 Query 104550 ATATCTGCAT 104559 | |||||||| Sbjct 197406 AGATCTGCAT 197415 >seq10678 Length=68604 Score = 105 bits (116), Expect = 2e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 268829 GAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTT 268888 || |||||| ||||| ||| || | | || ||||| || | | ||||||||| ||| Sbjct 45306 GACGAAAGATACTTTATCTCTCATGTCTTGGCATTTTTCGCCGCTTCTGATGGTATTGTT 45365 Query 268889 AACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTT 268948 ||||| ||||| | || | ||| |||| ||||| | | ||||||| | ||||| Sbjct 45366 AACGAGAATCTGATTGAAAGATTCAGTCAGGAGGTGAAAGTCGCTGAAGCACGTTGTTTC 45425 Query 268949 TACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGAT 269008 ||||| ||||| || || ||||| ||||||||||| || ||||| | | | || || Sbjct 45426 TACGGCTTCCAAATGGCCATAGAGAATATTCATTCCGAAATGTATTCTTTGCTCATTGAA 45485 Query 269009 ACTTATAT 269016 |||||||| Sbjct 45486 ACTTATAT 45493 >seq9876 Length=23795 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| || |||||||| ||||| ||||||||||| | ||||| | ||| ||||| Sbjct 12414 CCTTCCTTGTCCTGAATTTTTGCCTTTACATTTTCGATCGTATCCGATGCTTCAACCTCA 12355 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || |||||||| || ||||| ||||| ||||| |||||||| Sbjct 12354 AGGGTGATAGTCTTCCCCGTAAGAGTTTTCACAAAGATCTGCAT 12311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151219366184288