Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq6771 188 2e-42
seq7200 179 9e-40
seq9711 176 1e-38
seq10900 131 4e-25
seq10678 105 2e-17
seq9876 93.3 1e-13
>seq6771
Length=7421
Score = 188 bits (208), Expect = 2e-42
Identities = 169/212 (80%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || ||||| | |||||||| ||||| || |||||||| || |||||||| || |||
Sbjct 306 AGAACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCGGAAAGAGTTCTGCCATCT 247
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| |||||||| |||||||||||||| | ||| ||||| ||||| || |||||||| ||
Sbjct 246 TCAAGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCT 187
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
|| ||||| ||||| ||||| |||| || || || ||| || || || || |||||
Sbjct 186 TGGATCTTAGCTTTGACATTCTCTATAGTGTCTGAAGCTTCAACTTCGAGGGTGATAGTT 127
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|||||||| || |||||||| || ||||||||
Sbjct 126 TTACCAGTGAGAGTTTTTACGAAGATCTGCAT 95
>seq7200
Length=105881
Score = 179 bits (198), Expect = 9e-40
Identities = 167/212 (79%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || | ||| || || ||||||||||||||||| |||||||| || || | ||| |||
Sbjct 105808 AGAACCAAATGCAAGGTTGATTCTTTCTGAATATTGTAGTCAGAAAGTGTACGACCATCT 105749
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| || |||||||| ||||| |||| |||||||||||| ||||| |||||||| ||||||
Sbjct 105748 TCCAGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGAGGGATTCCTTCCTTATCC 105689
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
||||| || ||||| |||||||| | || || | || || || | |||||| |||
Sbjct 105688 TGAATTTTGGCTTTGACATTTTCGATCGTGTCCGATGCCTCAACTTCCAATGTAATGGTC 105629
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| ||||| | |||||| || || || |||||
Sbjct 105628 TTTCCAGTCAATGTTTTAACGAAAATTTGCAT 105597
Score = 165 bits (182), Expect = 2e-35
Identities = 165/214 (77%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || | ||| || || ||||| || ||||||||||| || || ||||| | ||| ||
Sbjct 105125 AAGAACCAAATGCAAGGTTGATTCCTTTTGAATATTATAATCTGAGAGAGTACGACCATC 105066
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|| ||||| ||||||||||| || | ||||| ||||| || || || |||||||||||
Sbjct 105065 CTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATGCCTTCTTTATC 105006
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
||||| || ||||| ||||| || | ||||| || |||||||| | || || ||
Sbjct 105005 TTGAATTTTCGCTTTGACATTCTCAATCGTATCAGAAGCCTCTACCTCCAAAGTGATGGT 104946
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
||| ||||| || ||||| ||||| |||||||||
Sbjct 104945 CTTTCCAGTCAGGGTTTTAACAAAAATCTGCATT 104912
Score = 143 bits (158), Expect = 6e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| |||| ||| || || |||||||| ||||| ||||| || || || || | |||||
Sbjct 105580 AGAACTAAATGCAACGTTGATTCTTTTTGAATGTTATAATCTGAAAGCGTGCGGCCGTCC 105521
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
||||| || ||||| || || || | |||||| ||||| || || |||||||| ||||||
Sbjct 105520 TCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCTTCCTTATCC 105461
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
||||| || ||||| || || || | || || | ||| ||||| | ||| || |||
Sbjct 105460 TGAATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAACCTCCAATGTGATGGTC 105401
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || || | |||||| ||||| || |||||
Sbjct 105400 TTTCCCGTCAATGTTTTAACAAAAATTTGCAT 105369
Score = 136 bits (150), Expect = 9e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
||||| || | || | ||| || | || | || ||||| || || ||||| ||||||
Sbjct 104914 ATTCCGCCACGTAATCGAAGAACCAAGTGAAGAGTCGATTCCTTTTGGATATTGTAGTCA 104855
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| | || | |||||||| || |||||||||||||| || | | ||| || |||||
Sbjct 104854 GACAAGGTACGTCCGTCTTCAAGCTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCAGGT 104795
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || |||||||| ||||||||||||||||| || || || | || || || ||
Sbjct 104794 GGGATGCCTTCTTTGTCCTGAATCTTTGCTTTCACGTTCTCGATAGTGTCAGAAGCCTCA 104735
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || || || ||||| ||||| | || || || || ||||||||
Sbjct 104734 ACCTCAAGAGTTATGGTCTTTCCAGTCAACGTCTTCACGAAAATCTGCAT 104685
>seq9711
Length=151070
Score = 176 bits (194), Expect = 1e-38
Identities = 166/212 (78%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || | ||| || || |||||||||||||| || ||||| || || || | || |||
Sbjct 104003 AGAACCAAATGCAAGGTCGATTCTTTCTGAATGTTGTAGTCGGAAAGTGTACGGCCATCT 103944
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| |||||||||||||| || |||| ||||| ||||| ||||| |||||||| |||||
Sbjct 103943 TCCAGTTGTTTTCCAGCGAAGATTAATCTCTGCTGATCCGGAGGGATTCCTTCCTTATCT 103884
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
||||| || ||||| |||||||| | || || || ||| ||||| | |||||| ||
Sbjct 103883 TGAATTTTGGCTTTGACATTTTCAATTGTGTCCGAAGCTTCAACCTCCAATGTAATGGTT 103824
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| ||||| || ||||| ||||| ||||||||
Sbjct 103823 TTGCCAGTGAGAGTTTTAACAAAAATCTGCAT 103792
Score = 168 bits (186), Expect = 2e-36
Identities = 174/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391
||| ||||| || | |||||| || || | ||| |||||||| |||||||| ||||| ||
Sbjct 104475 TCCACCTCTAAGTCGAAGTACAAGGTGGAGTGTGGATTCTTTTTGAATATTGTAGTCGGA 104416
Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451
| ||||| ||||| || |||||||| ||||| ||||| || || || ||||| |||||
Sbjct 104415 CAAAGTTCGTCCGTCCTCGAGTTGTTTGCCAGCGAAAATCAGTCTTTGCTGATCGGGAGG 104356
Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511
|| || ||||| || ||||| || || || || || || | || || || || ||
Sbjct 104355 AATGCCCTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCCTCGAC 104296
Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||||||| ||||| || ||||| | || || ||||||||||||||
Sbjct 104295 CTCTAGTGTTATAGTTTTGCCAGTTAAAGTCTTGACAAATATCTGCAT 104248
Score = 136 bits (150), Expect = 9e-27
Identities = 161/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401
||||| | |||| ||| | || |||||||||||||| ||||| || || || || |
Sbjct 104237 AGCCTCAAAACTAAATGCAGAGTGGATTCTTTCTGAATGTTATAATCTGAAAGCGTGCGG 104178
Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461
||||| ||||| || ||||| || || || | |||||| ||||| || || ||||||||
Sbjct 104177 CCGTCCTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCTTCC 104118
Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521
||||||||||| || ||||| || || || | || || | ||| ||||| | |||
Sbjct 104117 TTATCCTGAATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAACCTCCAATGTG 104058
Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| ||||| || || | ||||| || || || |||||
Sbjct 104057 ATGGTCTTTCCCGTCAAGGTTTTGACGAAAATTTGCAT 104020
Score = 125 bits (138), Expect = 2e-23
Identities = 104/127 (82%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401
||||| | || | |||||| ||||| ||||||||||| || ||||| || || || | |
Sbjct 103781 AGCCTCAAGACCAAATGTAACGTAGACTCTTTCTGAATGTTGTAGTCTGAAAGTGTACGA 103722
Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461
|| ||||| || |||||||| ||||| |||| |||||||||||| ||||| ||||||||
Sbjct 103721 CCATCTTCCAGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGAGGGATTCCTTCC 103662
Query 104462 TTATCCT 104468
|||||||
Sbjct 103661 TTATCCT 103655
>seq10900
Length=227893
Score = 131 bits (144), Expect = 4e-25
Identities = 143/190 (75%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429
|||| ||||| || || || || || || | || || ||||||||||| ||||| || |
Sbjct 197226 CTTTTTGAATGTTGTAATCTGAAAGGGTGCGTCCATCCTCTAGTTGTTTGCCAGCGAAGA 197285
Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489
| || ||||| ||||| || || |||||||| |||||||||||||| || || || || |
Sbjct 197286 TGAGTCTCTGCTGATCCGGTGGAATTCCTTCCTTATCCTGAATCTTAGCCTTGACGTTCT 197345
Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549
| | |||||| | || ||||| || || || |||||||| || || || || || |
Sbjct 197346 CGATGGTATCAGAGGCCTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCACGA 197405
Query 104550 ATATCTGCAT 104559
| ||||||||
Sbjct 197406 AGATCTGCAT 197415
>seq10678
Length=68604
Score = 105 bits (116), Expect = 2e-17
Identities = 136/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 268829 GAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTT 268888
|| |||||| ||||| ||| || | | || ||||| || | | ||||||||| |||
Sbjct 45306 GACGAAAGATACTTTATCTCTCATGTCTTGGCATTTTTCGCCGCTTCTGATGGTATTGTT 45365
Query 268889 AACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTT 268948
||||| ||||| | || | ||| |||| ||||| | | ||||||| | |||||
Sbjct 45366 AACGAGAATCTGATTGAAAGATTCAGTCAGGAGGTGAAAGTCGCTGAAGCACGTTGTTTC 45425
Query 268949 TACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGAT 269008
||||| ||||| || || ||||| ||||||||||| || ||||| | | | || ||
Sbjct 45426 TACGGCTTCCAAATGGCCATAGAGAATATTCATTCCGAAATGTATTCTTTGCTCATTGAA 45485
Query 269009 ACTTATAT 269016
||||||||
Sbjct 45486 ACTTATAT 45493
>seq9876
Length=23795
Score = 93.3 bits (102), Expect = 1e-13
Identities = 83/104 (80%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515
||||| || |||||||| ||||| ||||||||||| | ||||| | ||| |||||
Sbjct 12414 CCTTCCTTGTCCTGAATTTTTGCCTTTACATTTTCGATCGTATCCGATGCTTCAACCTCA 12355
Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || |||||||| || ||||| ||||| ||||| ||||||||
Sbjct 12354 AGGGTGATAGTCTTCCCCGTAAGAGTTTTCACAAAGATCTGCAT 12311
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151219366184288
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