Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq2247 84.2 5e-12 >seq2247 Length=25848 Score = 84.2 bits (92), Expect = 5e-12 Identities = 140/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 33067 CTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAGTTTCCGCGCCGGCT 33126 ||||||||| | ||| | ||| ||||| || |||||||||||| || || || || || Sbjct 25449 CTTCAGACTGCGGAACAGGCGCTCCATCGGCGAGTTATCCCAGCAATTCCCTCGGCGACT 25508 Query 33127 CATACTCTGTCTG-ATCTGGTATCGCCACAATAACTGCCGGAACTGCCTGCTCGTATAAT 33185 ||| ||||| ||| ||| | || ||||| | ||||| ||| | | ||| | || | Sbjct 25509 CATGCTCTG-CTGCATCCGATAGCGCCAGAGCCGTTGCCGAAACAGGCGGCTGGCGTACT 25567 Query 33186 GACTGCCCTGATCGCTGTGGAACATCACCCCGCCG-GGCTTACCACGGGTTTCCCATGCC 33244 | |||||||| || ||||||| || || || | ||||| || || ||| | ||| Sbjct 25568 GGCTGCCCTGGTCTGAATGGAACAGCA-CCTGCTGTGGCTTGCCGCGCTGTTCGTAGGCC 25626 Query 33245 ATTTCCAGCGCTTTCAT 33261 || ||||| || || || Sbjct 25627 ATGTCCAGGGCCTTGAT 25643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124798012142160