Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq7200 91.5 1e-13 seq6771 87.8 2e-12 seq10900 84.2 2e-11 seq9711 82.4 6e-11 >seq7200 Length=105881 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/233 (70%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || ||||| | | |||||||| | || || ||||||||||||||||||| Sbjct 105368 ACCACCACGCAATCGGAGAACTAAATGCAACGTTGATTCTTTTTGAATGTTGTAATCAGA 105309 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || ||| || ||||||| || || || || | | || || | ||||||||| | Sbjct 105308 -AAGTGTGCGACCGTCCTCAAGTTGTTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAG 105250 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCT----ATGGTATCGGTAGAC 48673 | | | |||||| || |||||| ||||| |||| | || || || | || | Sbjct 105249 GAATTCCTTCCTTATCTTGAATTTT-TGCTTT---GACGTTTTCGATCGTGTCCGAAGCC 105194 Query 48674 TCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || | ||| |||||||| || ||||||||||| |||||||||||||| Sbjct 105193 TCGACTTCCAATGTGATGGTTTTTCCTGTGAGAGTTTTGACAAAAATCTGCAT 105141 >seq6771 Length=7421 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 |||||||| | | || ||||| || ||||| |||||||| ||||||||||| | Sbjct 549 CCTCCGCGAAGTCGCAAAACTAAGTGGAGTGTTGATTCCTTTTGGATGTTGTAATCTGA- 491 Query 48560 AATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || ||| || | || || ||||| || || || |||||| |||||| |||||| | Sbjct 490 AAGAGTC-CTGCCATCTTCAAGCTGTTTGCCAGCGAAAATTAGACGCTGTTGATCCGGGG 432 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | || |||||| ||||| || | | |||| ||||| | || || Sbjct 431 GAATTCCCTCTTTGTCCTGGATTTTAGCTTTCACGTTCTCTATAGTATCCGAAGCTTCAA 372 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || || |||||||||||||||||||| || || |||||||| Sbjct 371 CTTCAAGGGTGATAGTTTTACCGGTGAGAGTTTTTACGAAGATCTGCAT 323 >seq10900 Length=227893 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 48539 TTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAAT 48597 ||||||||||||||||| | || || || | ||||| || || || || || | || Sbjct 197228 TTTTGAATGTTGTAATCTG-AAAGGGTGCGTCCATCCTCTAGTTGTTTGCCAGCGAAGAT 197286 Query 48598 TAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGC 48657 | | |||||||||| || | | |||||| ||| ||| || ||||| | | Sbjct 197287 GAGTCTCTGCTGATCCGGTGGAATTCCTTCCTTATCCTGAATCTTAGCCTTGACGTTCTC 197346 Query 48658 TATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAA 48717 |||||||| | | |||| ||||| || ||||| ||||| ||||| || ||||| || Sbjct 197347 GATGGTATCAGAGGCCTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCACGAA 197406 Query 48718 AATCTGCATCGTG 48730 |||||||| ||| Sbjct 197407 GATCTGCATGGTG 197419 >seq9711 Length=151070 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 || || ||||||||||| || | || ||| || | || ||||| || || || || | Sbjct 103982 TCTTTCTGAATGTTGTAGTCGGA-AAGTGTACGGCCATCTTCCAGTTGTTTTCCAGCGAA 103924 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||||| | |||||||||| || | | |||||| || |||||| |||| | Sbjct 103923 GATTAATCTCTGCTGATCCGGAGGGATTCCTTCCTTATCTTGAATTTTGGCTTTGACATT 103864 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || || || | || || ||| | ||| |||||||| || ||||||||||| || Sbjct 103863 TTCAATTGTGTCCGAAGCTTCAACCTCCAATGTAATGGTTTTGCCAGTGAGAGTTTTAAC 103804 Query 48715 AAAAATCTGCAT 48726 |||||||||||| Sbjct 103803 AAAAATCTGCAT 103792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421188893788136