Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq9516 84.2 1e-11 >seq9516 Length=24924 Score = 84.2 bits (92), Expect = 1e-11 Identities = 191/283 (67%), Gaps = 6/283 (2%) Strand=Plus/Minus Query 3849 TGATTATGAAAGATACCGAAGGAAAAGGTGTACATTTTATGATGGCTGACGGTGGGTTCT 3908 |||||||||| | ||| | || ||||| || ||||||||| | |||||||| |||| Sbjct 17616 TGATTATGAAGCACACCAACAACAAGGGTGTGCACTTTATGATGTCAGACGGTGGATTCT 17557 Query 3909 CGGTTGAGGGTCAAGAAAATATGCAAGAAATGTTATCGAAAAAGATGTATTTGTGTCAAT 3968 | || ||||| || || || || || || || | |||||| || | ||| |||| || | Sbjct 17556 CAGTGGAGGGACAGGAGAACATTCAGGAGATTCTGTCGAAACAGTTATATCTGTGCCAGT 17497 Query 3969 GTTTAATTGCATTGATGATCATACGAATTGGTGGTCATTGTGTTATCAAATTTTTCGATA 4028 | | | || ||| || | || || || || | ||||| || | ||||| Sbjct 17496 GCCTGGTAGCCCTGAGAATAGTGAGACCGGGCGGACACTTTGTTACGAAGCTGTTCGACT 17437 Query 4029 TATTTACACCTTTTAGTG-CTGGTTTAGTGTATTTGATGTATAGATCTTTTAATCGTATT 4087 |||| || ||||| || | || ||| | ||| ||||||| | | || | |||| Sbjct 17436 TATTCACGCCTTTCAGCATCGGGCTTATT-TATCTGATGTACAAGTGCTTCGACAGTATC 17378 Query 4088 TGTATTTTCAAACC--ACATTCATCGCGACCGGCCAATTCTGA 4128 | ||||||||||| ||| | || | || |||||||| || Sbjct 17377 TCCATTTTCAAACCCAACAGT--TCCAGGCCAGCCAATTCAGA 17337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276512695648408