Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq10127 120 2e-22
seq10050 120 2e-22
seq10038 120 2e-22
seq7384 116 2e-21
seq5557 114 7e-21
>seq10127
Length=79139
Score = 120 bits (132), Expect = 2e-22
Identities = 73/78 (94%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 36948 AAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 36889
Query 11512 CAACTGAGCTAATGGGCC 11529
||||||||||||||||||
Sbjct 36888 CAACTGAGCTAATGGGCC 36871
Score = 114 bits (126), Expect = 7e-21
Identities = 70/75 (93%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 36579 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 36520
Query 11515 CTGAGCTAATGGGCC 11529
|||||||||||||||
Sbjct 36519 CTGAGCTAATGGGCC 36505
>seq10050
Length=198097
Score = 120 bits (132), Expect = 2e-22
Identities = 81/90 (90%), Gaps = 1/90 (1%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAA-TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499
||||||||| || ||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 17888 AATAAAAAAAAAAGCTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 17829
Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||| ||||||||||||||||||||
Sbjct 17828 CGACGCTCTAACCAACTGAGCTAATGGGCC 17799
>seq10038
Length=83411
Score = 120 bits (132), Expect = 2e-22
Identities = 73/78 (94%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 48892 AAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 48951
Query 11512 CAACTGAGCTAATGGGCC 11529
||||||||||||||||||
Sbjct 48952 CAACTGAGCTAATGGGCC 48969
>seq7384
Length=95597
Score = 116 bits (128), Expect = 2e-21
Identities = 85/98 (87%), Gaps = 1/98 (1%)
Strand=Plus/Minus
Query 11432 TATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGT 11491
|||| ||| | || |||| || |||||||||| |||||||||| ||||||||||||
Sbjct 19026 TATAAAAT-ATTAGAAAAAAAATCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGT 18968
Query 11492 TATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||||||||| ||||||||||||||||||||
Sbjct 18967 TATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 18930
>seq5557
Length=36804
Score = 114 bits (126), Expect = 7e-21
Identities = 77/86 (90%), Gaps = 2/86 (2%)
Strand=Plus/Minus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
||||||| | |||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 4940 AAAAAAT--ATCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 4883
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| ||||||||||||||||||||
Sbjct 4882 GCTCTAACCAACTGAGCTAATGGGCC 4857
Lambda K H
0.638 0.410 0.920
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261452523490336
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |