Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq10127 120 2e-22 seq10050 120 2e-22 seq10038 120 2e-22 seq7384 116 2e-21 seq5557 114 7e-21 >seq10127 Length=79139 Score = 120 bits (132), Expect = 2e-22 Identities = 73/78 (94%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 |||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || Sbjct 36948 AAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 36889 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 36888 CAACTGAGCTAATGGGCC 36871 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 36579 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 36520 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 36519 CTGAGCTAATGGGCC 36505 >seq10050 Length=198097 Score = 120 bits (132), Expect = 2e-22 Identities = 81/90 (90%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAA-TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||||||||| || ||||||||||| |||||||||| |||||||||||||||||||| Sbjct 17888 AATAAAAAAAAAAGCTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 17829 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||||||| Sbjct 17828 CGACGCTCTAACCAACTGAGCTAATGGGCC 17799 >seq10038 Length=83411 Score = 120 bits (132), Expect = 2e-22 Identities = 73/78 (94%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 |||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || Sbjct 48892 AAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 48951 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 48952 CAACTGAGCTAATGGGCC 48969 >seq7384 Length=95597 Score = 116 bits (128), Expect = 2e-21 Identities = 85/98 (87%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 11432 TATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGT 11491 |||| ||| | || |||| || |||||||||| |||||||||| |||||||||||| Sbjct 19026 TATAAAAT-ATTAGAAAAAAAATCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGT 18968 Query 11492 TATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||| |||||||||||||||||||| Sbjct 18967 TATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 18930 >seq5557 Length=36804 Score = 114 bits (126), Expect = 7e-21 Identities = 77/86 (90%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 4940 AAAAAAT--ATCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 4883 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 4882 GCTCTAACCAACTGAGCTAATGGGCC 4857 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261452523490336