Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq7200 156 4e-33 seq9711 123 2e-23 seq6771 122 8e-23 seq9876 102 7e-17 seq10900 98.7 9e-16 >seq7200 Length=105881 Score = 156 bits (172), Expect = 4e-33 Identities = 181/242 (75%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || || | |||||| | || || ||||| || ||||| ||||| | Sbjct 105380 AAAAATTTGCATACCACCACGCAATCGGAGAACTAAATGCAACGTTGATTCTTTTTGAAT 105321 Query 94828 GTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||| ||||| | ||||| || ||||| || ||||| || ||||||| |||||| Sbjct 105320 GTTGTAATCAG--AAAGTGTGCGACCGTCCTCAAGTTGTTTGCCAGCAAAGATCAATCTT 105263 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 |||||||| |||||||| ||||| || || | ||||||||| |||||| ||| ||| Sbjct 105262 TGCTGATCCGGAGGAATTCCTTCCTTATCTTGAATTTTTGCTTTGACGTTTTCGATCGTG 105203 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | ||||| || | |||||||||||||| || |||||||| ||||| |||||| Sbjct 105202 TCCGAAGCCTCGACTTCCAATGTGATGGTTTTTCCTGTGAGAGTTTTGACAAAAATCTGC 105143 Query 95006 AT 95007 || Sbjct 105142 AT 105141 Score = 138 bits (152), Expect = 1e-27 Identities = 177/242 (73%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || ||| || | ||| || | ||||| ||||| || ||||||||||| | Sbjct 105152 AAAAATCTGCATTCCACCACGCAAACGAAGAACCAAATGCAAGGTTGATTCCTTTTGAAT 105093 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 |||||||| | | || || || |||||| || || ||||| ||||||| ||||| Sbjct 105092 ATTATAATC--TGAGAGAGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTC 105035 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||||||||| || || |||||||| || | |||||| || ||||| | | || Sbjct 105034 TGCTGATCTGGTGGGATGCCTTCTTTATCTTGAATTTTCGCTTTGACATTCTCAATCGTA 104975 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| || || || | |||||||| |||||||| || ||||| ||||| |||||| Sbjct 104974 TCAGAAGCCTCTACCTCCAAAGTGATGGTCTTTCCAGTCAGGGTTTTAACAAAAATCTGC 104915 Query 95006 AT 95007 || Sbjct 104914 AT 104913 Score = 116 bits (128), Expect = 3e-21 Identities = 172/242 (71%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || ||| || | ||||| | |||||||| | ||| ||||||||||| | Sbjct 104924 AAAAATCTGCATTCCGCCACGTAATCGAAGAACCAAGTGAAGAGTCGATTCCTTTTGGAT 104865 Query 94828 GTTATAATCGCTCATAGT--GTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 || || || || || || | || || ||||||||||| ||||||| || | Sbjct 104864 ATTGTAGTCAGACAAGGTACGTCCG--TCTTCAAGCTGTTTTCCAGCAAAGATCAAACGC 104807 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||| || || || || ||||||||||| | ||| ||||| || ||| ||| |||| Sbjct 104806 TGCTGGTCAGGTGGGATGCCTTCTTTGTCCTGAATCTTTGCTTTCACGTTCTCGATAGTG 104747 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| || || |||| || ||||| |||||||| | || ||||| || |||||| Sbjct 104746 TCAGAAGCCTCAACCTCAAGAGTTATGGTCTTTCCAGTCAACGTCTTCACGAAAATCTGC 104687 Query 95006 AT 95007 || Sbjct 104686 AT 104685 Score = 114 bits (126), Expect = 1e-20 Identities = 171/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || || | ||| || | ||||| ||||| || ||||| || || | Sbjct 105835 AAAATTTGCATACCACCACGCAAACGGAGAACCAAATGCAAGGTTGATTCTTTCTGAATA 105776 Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || || || | ||||| || ||| ||||||||||||||| |||||||||| || | Sbjct 105775 TTGTAGTCAG--AAAGTGTACGACCATCTTCCAGCTGTTTTCCGGCAAAGATTAACCTCT 105718 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 | ||||||||||| || ||||| || || | |||||| || ||||| ||| |||| Sbjct 105717 GTTGATCTGGAGGGATTCCTTCCTTATCCTGAATTTTGGCTTTGACATTTTCGATCGTGT 105658 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | || || || | || ||||| |||||||| | ||||| || || || |||| Sbjct 105657 CCGATGCCTCAACTTCCAATGTAATGGTCTTTCCAGTCAATGTTTTAACGAAAATTTGCA 105598 Query 95007 T 95007 | Sbjct 105597 T 105597 >seq9711 Length=151070 Score = 123 bits (136), Expect = 2e-23 Identities = 173/241 (72%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || || | ||| || | ||||| ||||| || ||||| || || | | Sbjct 104030 AAAATTTGCATACCACCACGCAAACGGAGAACCAAATGCAAGGTCGATTCTTTCTGAATG 103971 Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || || ||| | ||||| | ||| ||||| |||||||| | ||||||||||| | Sbjct 103970 TTGTAGTCGG--AAAGTGTACGGCCATCTTCCAGTTGTTTTCCAGCGAAGATTAATCTCT 103913 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 ||||||| ||||| || ||||| || || | |||||| || ||||| | | |||| Sbjct 103912 GCTGATCCGGAGGGATTCCTTCCTTATCTTGAATTTTGGCTTTGACATTTTCAATTGTGT 103853 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | || || || | || |||||||| ||||| |||||||| ||||| ||||||| Sbjct 103852 CCGAAGCTTCAACCTCCAATGTAATGGTTTTGCCAGTGAGAGTTTTAACAAAAATCTGCA 103793 Query 95007 T 95007 | Sbjct 103792 T 103792 Score = 109 bits (120), Expect = 5e-19 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 94779 CTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGC 94838 |||| ||||| | ||| | || | ||| | || ||||| ||||| | || || ||| Sbjct 104476 CTCCACCTCTAAGTCGAAGTACAAGGTGGAGTGTGGATTCTTTTTGAATATTGTAGTCGG 104417 Query 94839 TCATAGT--GTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 || ||| || | ||||| || ||||| || | || || | |||||||||||| || Sbjct 104416 ACAAAGTTCGTCCG--TCCTCGAGTTGTTTGCCAGCGAAAATCAGTCTTTGCTGATCGGG 104359 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 |||||| || |||||||| | |||||| ||||| ||| ||| ||||| | || Sbjct 104358 AGGAATGCCCTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCCTC 104299 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || | || || ||||| ||||| | ||| || ||||| |||||||| Sbjct 104298 GACCTCTAGTGTTATAGTTTTGCCAGTTAAAGTCTTGACAAATATCTGCAT 104248 Score = 89.7 bits (98), Expect = 5e-13 Identities = 94/122 (77%), Gaps = 4/122 (3%) Strand=Plus/Minus Query 94795 CAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--A 94852 ||| ||||| || || ||||| || || || | ||| || || | | ||||| || | Sbjct 103776 CAAGACCAAATGTAACGTAGACTCTTTCTGAATGTTGTAGTC--TGAAAGTGTACGACCA 103719 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || ||||||||||||||| |||||||||| || || ||||||||||| || ||||| || Sbjct 103718 TCTTCCAGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGAGGGATTCCTTCCTTA 103659 Query 94913 TC 94914 || Sbjct 103658 TC 103657 >seq6771 Length=7421 Score = 122 bits (134), Expect = 8e-23 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||| || | ||||||||||| || | |||||| ||| | ||| || | Sbjct 309 CGCAGAACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCGGAAAGAGTTCTGCCA 250 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || || ||||| || |||| |||| | ||||||||||||||||| ||||||||| Sbjct 249 TCTTCAAGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGAGGAATGCCTTCTTTG 190 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || || ||||| | | |||||| | || || || | ||||| Sbjct 189 TCTTGGATCTTAGCTTTGACATTCTCTATAGTGTCTGAAGCTTCAACTTCGAGGGTGATA 130 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| ||||| |||||||| || ||||||||||||| Sbjct 129 GTTTTACCAGTGAGAGTTTTTACGAAGATCTGCATGC 93 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | | |||||| || ||||| | || ||||||||||| | ||| ||||| Sbjct 549 CCTCCGCGAAGTCGCAAAACTAAGTGGAGTGTTGATTCCTTTTGGATGTTGTAATCTGAA 490 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| || ||| || |||||||| || | || |||| | || ||||| || ||| Sbjct 489 AGAGTCCTGCCATCTTCAAGCTGTTTGCCAGCGAAAATTAGACGCTGTTGATCCGGGGGA 430 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || |||||||| | ||||| || || ||| | | ||| || | || || Sbjct 429 ATTCCCTCTTTGTCCTGGATTTTAGCTTTCACGTTCTCTATAGTATCCGAAGCTTCAACT 370 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||| ||||| ||||| || || |||||||| || ||||||||||||| Sbjct 369 TCAAGGGTGATAGTTTTACCGGTGAGAGTTTTTACGAAGATCTGCATGC 321 >seq9876 Length=23795 Score = 102 bits (112), Expect = 7e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| ||| ||||||||||| || ||||||||||||||||| | ||| || || | Sbjct 12955 CCGCCTCGCAAGCGCAACACCAAATGTAAAGTAGATTCCTTTTGAATGTTGTAGTCCGAC 12896 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || || ||| |||| || || || ||||||| ||||||||||||||||| ||| Sbjct 12895 AATGTCCTGCCATCTTCCAATTGCTTGCCAGCAAAGATCAATCTTTGCTGATCTGGCGGA 12836 Query 94901 ATACCT 94906 || ||| Sbjct 12835 ATTCCT 12830 >seq10900 Length=227893 Score = 98.7 bits (108), Expect = 9e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| || ||||| || | ||||| | ||| |||||||| || ||||| ||||| || Sbjct 197260 ATCCTCTAGTTGTTTGCCAGCGAAGATGAGTCTCTGCTGATCCGGTGGAATTCCTTCCTT 197319 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | ||| || ||||||||| ||| || |||| | || || || | ||||| Sbjct 197320 ATCCTGAATCTTAGCCTTGACGTTCTCGATGGTATCAGAGGCCTCCACCTCGAGGGTGAT 197379 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 ||| || || || || || ||||| |||||||||||| Sbjct 197380 GGTCTTACCCGTGAGGGTCTTCACGAAGATCTGCATG 197416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448223194224960