Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq9790 188 1e-43 seq10767 170 3e-38 >seq9790 Length=93109 Score = 188 bits (208), Expect = 1e-43 Identities = 202/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| | | | |||||| ||||||||||| || || ||||||||||||||| Sbjct 51461 GCAAAGCGTCACAGGAAAGTTCTTCGCGATAACATCCAGGGCATTACCAAGCCAGCTATC 51402 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| |||| || |||||||| ||||| ||| |||| || ||| |||| || || | Sbjct 51401 CGTCGTTTGGCACGACGTGGTGGTGTCAAACGTATCTCCGGCTTGATCTACGAGGAAACC 51342 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| ||||||| ||| |||||| | |||||| || ||| |||||| Sbjct 51341 CGTGGCGTATTGAAAGTCTTCCTTGAGAACGTTATTCGCGATGCTGTCACCTACACCGAG 51282 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||| | ||||| || || ||||||| |||| || || |||| || |||||| Sbjct 51281 CACGCAAAAAGGAAGACCGTGACTGCCATGGACGTCGTATACGCCCTGAAGCGCCAAGGC 51222 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || || ||||| ||||| Sbjct 51221 AGAACTCTATACGGCTTTGGTGGTTAA 51195 >seq10767 Length=70975 Score = 170 bits (188), Expect = 3e-38 Identities = 198/267 (74%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||| | | ||||| ||||||||||| || |||||||||||||| ||| Sbjct 40079 GCGAAGAGACATCGTAAAGTACTTCGCGATAACATCCAGGGTATCACCAAGCCAGCCATC 40138 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || |||||||| |||||||||||| |||| ||||| | ||||| |||| Sbjct 40139 CGTCGTCTAGCACGTCGTGGCGGAGTCAAGCGTATCTCCGGATTAATTTATGAGGAGACA 40198 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| |||| | || || | | |||||| | ||| || | ||| |||||| Sbjct 40199 CGTGGTGTACTGAAAGTATTTCTAGAAAACGTTATTCGTGACGCGGTTACCTACACCGAG 40258 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || ||| | |||||||| || | ||||| | ||||| || ||||||| ||||| Sbjct 40259 CATGCGAAAAGAAAGACTGTGACTGCTATGGACGTTGTCTACGCCCTGAAACGCCAAGGA 40318 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | |||| || || || ||||| Sbjct 40319 AGAACTCTTTACGGCTTCGGCGGTTAA 40345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79064103970248