Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq10678 257 1e-63
seq9251 136 3e-27
seq7200 129 4e-25
seq1536 127 1e-24
seq1478 127 1e-24
seq9711 116 2e-21
seq6771 105 4e-18
seq6631 98.7 7e-16
>seq10678
Length=68604
Score = 257 bits (284), Expect = 1e-63
Identities = 316/430 (73%), Gaps = 4/430 (1%)
Strand=Plus/Plus
Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233
||||| ||||| ||||| || || || || || ||||| |||||||| ||| ||
Sbjct 39384 AACGTCAATCGCAATGTCAGCGATGCCTTTTATCGTTACAAGATGCCGCGGATCCAGGCA 39443
Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293
|| || || || || ||||| || ||||| || || || ||||||||| || || ||
Sbjct 39444 AAAGTGGAAGGCAAAGGAAATGGCATTAAGACAGTGATCGTCAACATGGTGGATGTGGCG 39503
Query 6294 AAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCT 6353
|||||| | || || || || || || ||||| |||||||| || ||||| | |||||
Sbjct 39504 AAGGCGATTGGTCGTCCGGCTACGTATCCGACCAAATATTTTGGATGCGAGTTGGGCGCC 39563
Query 6354 CAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCC 6413
||||||||||||||| |||||| ||||| || ||||| ||||| |||||| || | |
Sbjct 39564 CAGACGCAGTTTGATTTCAAAAATGAGCGTTTTATCGTCAACGGTTCGCATGACGCAACA 39623
Query 6414 AAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGAT 6473
|||||||| || || | ||||| || ||||| |||| ||| || |||| || |||||
Sbjct 39624 AAGCTGCAAGATCTATTGGACGGTTTCATTCGAAAGTATGTCCTTTGTCCGGCCTGCGAC 39683
Query 6474 AACCCGGAGACCGAGCTTATTGTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAA 6533
|| ||||| ||||| || || || | | |||| | ||| ||||| || || ||||||
Sbjct 39684 AATCCGGAAACCGAACTGATGGTTAGTTCGAAGAAAGGCACGATCTCGCAAGGTTGCAAA 39743
Query 6534 GCGTGCGGTTACCATGGCAAGCTGG--ATTTATCACACAAACTCAACACCTTCATACTGA 6591
||||| || | |||||| |||| | | || |||||| | ||||| | ||| |||
Sbjct 39744 GCGTGTGGACATCATGGCCTTCTGGAAAGTAAT--CACAAATTGAACACGTACATCTTGA 39801
Query 6592 AGAATCCTCC 6601
| ||||| ||
Sbjct 39802 AAAATCCGCC 39811
>seq9251
Length=4726
Score = 136 bits (150), Expect = 3e-27
Identities = 87/95 (92%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 272 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 331
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 332 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 366
>seq7200
Length=105881
Score = 129 bits (142), Expect = 4e-25
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168
||||| |||||||| |||||||| |||||||| |||||||| |||| |||| ||
Sbjct 104893 ACCAAGTGAAGAGTCGATTCCTTTTGGATATTGTAGTCAGACAAGGTACGTCCGTCTTCA 104834
Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228
| |||||||| ||||| || | || || || || | |||| ||||||||||||| |
Sbjct 104833 AGCTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCAGGTGGGATGCCTTCTTTGTCCTGA 104774
Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288
|| ||| ||||| |||| || ||| || | ||||| || | || || || ||
Sbjct 104773 ATCTTTGCTTTCACGTTCTCGATAGTGTCAGAAGCCTCAACCTCAAGAGTTATGGTCTTT 104714
Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| ||||| || |||||||| ||||||||
Sbjct 104713 CCAGTCAACGTCTTCACGAAAATCTGCAT 104685
Score = 114 bits (126), Expect = 9e-21
Identities = 165/230 (72%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATG-AAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147
||||||| | |||||| | |||||||| ||| || | || || ||||||||||| |||
Sbjct 105825 TACCACCACGCAAACGGAGAACCAAATGCAAGGTTGAT-TCTTTCTGAATATTGTAGTCA 105767
Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207
|| | ||| | || || | |||||||||||||| |||| | |||||||| |
Sbjct 105766 GAAAGTGTACGACCATCTTCCAGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGA 105707
Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267
|||| ||||| || ||| |||||| || ||||| | || || || |||
Sbjct 105706 GGGATTCCTTCCTTATCCTGAATTTTGGCTTTGACATTTTCGATCGTGTCCGATGCCTCA 105647
Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||||| |||||||| || || || ||||| ||||| ||||| || |||||
Sbjct 105646 ACTTCCAATGTAATGGTCTTTCCAGTCAATGTTTTAACGAAAATTTGCAT 105597
Score = 104 bits (114), Expect = 2e-17
Identities = 165/233 (71%), Gaps = 3/233 (1%)
Strand=Plus/Minus
Query 38086 CATTACCACCTCTCAAACGCAACACCAAATG-AAGAGTGCTCTCCTTTTGAATATTGTAA 38144
|||| ||||| | |||||| | |||||||| ||| || | |||||||||||||| |||
Sbjct 105143 CATT-CCACCACGCAAACGAAGAACCAAATGCAAGGTTGAT-TCCTTTTGAATATTATAA 105086
Query 38145 TCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCG 38204
|| || | | ||| | || || | ||| ||||| ||||| || | | || |||||
Sbjct 105085 TCTGAGAGAGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCT 105026
Query 38205 GAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT 38264
| |||| ||||||||| || |||||| || ||||||| | ||||| |
Sbjct 105025 GGTGGGATGCCTTCTTTATCTTGAATTTTCGCTTTGACATTCTCAATCGTATCAGAAGCC 104966
Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| || || || || || || || || |||| |||||| || || ||||||||
Sbjct 104965 TCTACCTCCAAAGTGATGGTCTTTCCAGTCAGGGTTTTAACAAAAATCTGCAT 104913
>seq1536
Length=3993
Score = 127 bits (140), Expect = 1e-24
Identities = 85/95 (89%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||| |||||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 1877 AAGCTCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1936
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| |||||||||||||||||||| |||||||
Sbjct 1937 TAATCCGTTCATGCGCGTCACTAATTAAATGACGA 1971
>seq1478
Length=8230
Score = 127 bits (140), Expect = 1e-24
Identities = 84/93 (90%), Gaps = 5/93 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||| |||||| ||||||||||||||||||| || ||||||||
Sbjct 4167 AAGCCCGTTCCCTTGGCAGTGGTTACGCTAGATAGTAGATAGGGACAGTGGAAATCTCGT 4226
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989
|||||| ||||||||||||||||||||||||||
Sbjct 4227 TAATCCATTCATGCGCGTCACTAATTAGATGAC 4259
>seq9711
Length=151070
Score = 116 bits (128), Expect = 2e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
|||||||| | || | || | || || ||| || |||||||||||||| || |||
Sbjct 104474 CCACCTCTAAGTCGAAGTACAAGGTGGAGTGTGGATTCTTTTTGAATATTGTAGTCGGAC 104415
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
||| ||| |||| || | |||||| || || || || || | ||| ||||||| ||
Sbjct 104414 AAAGTTCGTCCGTCCTCGAGTTGTTTGCCAGCGAAAATCAGTCTTTGCTGATCGGGAGGA 104355
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||| |||||||| |||||| |||||| |||| || || || | || ||
Sbjct 104354 ATGCCCTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCCTCGACC 104295
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||| ||| |||||||| || || || || || || |||||||||||
Sbjct 104294 TCTAGTGTTATAGTTTTGCCAGTTAAAGTCTTGACAAATATCTGCAT 104248
Score = 96.9 bits (106), Expect = 2e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164
||| || ||||| |||||| || || ||||| || ||||| || | || ||||
Sbjct 104232 CAAAACTAAATGCAGAGTGGATTCTTTCTGAATGTTATAATCTGAAAGCGTGCGGCCGTC 104173
Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224
|||| || |||||||| || || | | || ||||| | |||| ||||| || ||
Sbjct 104172 CTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCTTCCTTATC 104113
Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284
| |||||| || || |||| || || ||| |||||| || ||||| || ||
Sbjct 104112 CTGAATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAACCTCCAATGTGATGGT 104053
Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| |||||||||||||| ||||| || |||||
Sbjct 104052 CTTTCCCGTCAAGGTTTTGACGAAAATTTGCAT 104020
>seq6771
Length=7421
Score = 105 bits (116), Expect = 4e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162
||||| || || || || || |||||||| || |||||||| || | | | |
Sbjct 537 CGCAAAACTAAGTGGAGTGTTGATTCCTTTTGGATGTTGTAATCTGAAAGAGTCCTGCCA 478
Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222
|| || | ||||| || || || ||||| || |||||||| | ||| | || ||||||
Sbjct 477 TCTTCAAGCTGTTTGCCAGCGAAAATTAGACGCTGTTGATCCGGGGGAATTCCCTCTTTG 418
Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282
||| ||||| ||||| |||| | |||||| | ||||||||| | || |||
Sbjct 417 TCCTGGATTTTAGCTTTCACGTTCTCTATAGTATCCGAAGCTTCAACTTCAAGGGTGATA 358
Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|||||||| || | ||||| ||||| |||||||||
Sbjct 357 GTTTTACCGGTGAGAGTTTTTACGAAGATCTGCATG 322
Score = 98.7 bits (108), Expect = 7e-16
Identities = 152/217 (70%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161
||||| |||| |||||| || ||||| || || || || || || | | | |
Sbjct 310 ACGCAGAACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCGGAAAGAGTTCTGCC 251
Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221
|| || | |||||| || ||||| ||||| || || ||||| | || | |||||||||
Sbjct 250 ATCTTCAAGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGAGGAATGCCTTCTTT 191
Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281
||| || || || ||||||| | ||| ||| | ||||||||| | || ||
Sbjct 190 GTCTTGGATCTTAGCTTTGACATTCTCTATAGTGTCTGAAGCTTCAACTTCGAGGGTGAT 131
Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
||||||||| || | ||||| ||||| |||||||||
Sbjct 130 AGTTTTACCAGTGAGAGTTTTTACGAAGATCTGCATG 94
>seq6631
Length=6040
Score = 98.7 bits (108), Expect = 7e-16
Identities = 68/77 (88%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||||||||||| ||| | |||||||||||||||| ||||||
Sbjct 846 CTCTCTCTTCAAAGTTCTTTTCAACTTTTCCTTATGGTACTTGTTCGCTATTAGTCTCGT 787
Query 20007 GGTAATATTTAGCCTTA 20023
||| ||||||| ||||
Sbjct 786 GGTCGTATTTAGGCTTA 770
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334897658797016
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |