Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq10678 257 1e-63 seq9251 136 3e-27 seq7200 129 4e-25 seq1536 127 1e-24 seq1478 127 1e-24 seq9711 116 2e-21 seq6771 105 4e-18 seq6631 98.7 7e-16 >seq10678 Length=68604 Score = 257 bits (284), Expect = 1e-63 Identities = 316/430 (73%), Gaps = 4/430 (1%) Strand=Plus/Plus Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233 ||||| ||||| ||||| || || || || || ||||| |||||||| ||| || Sbjct 39384 AACGTCAATCGCAATGTCAGCGATGCCTTTTATCGTTACAAGATGCCGCGGATCCAGGCA 39443 Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293 || || || || || ||||| || ||||| || || || ||||||||| || || || Sbjct 39444 AAAGTGGAAGGCAAAGGAAATGGCATTAAGACAGTGATCGTCAACATGGTGGATGTGGCG 39503 Query 6294 AAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCT 6353 |||||| | || || || || || || ||||| |||||||| || ||||| | ||||| Sbjct 39504 AAGGCGATTGGTCGTCCGGCTACGTATCCGACCAAATATTTTGGATGCGAGTTGGGCGCC 39563 Query 6354 CAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCC 6413 ||||||||||||||| |||||| ||||| || ||||| ||||| |||||| || | | Sbjct 39564 CAGACGCAGTTTGATTTCAAAAATGAGCGTTTTATCGTCAACGGTTCGCATGACGCAACA 39623 Query 6414 AAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGAT 6473 |||||||| || || | ||||| || ||||| |||| ||| || |||| || ||||| Sbjct 39624 AAGCTGCAAGATCTATTGGACGGTTTCATTCGAAAGTATGTCCTTTGTCCGGCCTGCGAC 39683 Query 6474 AACCCGGAGACCGAGCTTATTGTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAA 6533 || ||||| ||||| || || || | | |||| | ||| ||||| || || |||||| Sbjct 39684 AATCCGGAAACCGAACTGATGGTTAGTTCGAAGAAAGGCACGATCTCGCAAGGTTGCAAA 39743 Query 6534 GCGTGCGGTTACCATGGCAAGCTGG--ATTTATCACACAAACTCAACACCTTCATACTGA 6591 ||||| || | |||||| |||| | | || |||||| | ||||| | ||| ||| Sbjct 39744 GCGTGTGGACATCATGGCCTTCTGGAAAGTAAT--CACAAATTGAACACGTACATCTTGA 39801 Query 6592 AGAATCCTCC 6601 | ||||| || Sbjct 39802 AAAATCCGCC 39811 >seq9251 Length=4726 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||| |||||||||||||||||||||||||| || |||||||| Sbjct 272 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 331 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 332 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 366 >seq7200 Length=105881 Score = 129 bits (142), Expect = 4e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||| |||||||| |||||||| |||||||| |||||||| |||| |||| || Sbjct 104893 ACCAAGTGAAGAGTCGATTCCTTTTGGATATTGTAGTCAGACAAGGTACGTCCGTCTTCA 104834 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | |||||||| ||||| || | || || || || | |||| ||||||||||||| | Sbjct 104833 AGCTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCAGGTGGGATGCCTTCTTTGTCCTGA 104774 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || ||| ||||| |||| || ||| || | ||||| || | || || || || Sbjct 104773 ATCTTTGCTTTCACGTTCTCGATAGTGTCAGAAGCCTCAACCTCAAGAGTTATGGTCTTT 104714 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||| || |||||||| |||||||| Sbjct 104713 CCAGTCAACGTCTTCACGAAAATCTGCAT 104685 Score = 114 bits (126), Expect = 9e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATG-AAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 ||||||| | |||||| | |||||||| ||| || | || || ||||||||||| ||| Sbjct 105825 TACCACCACGCAAACGGAGAACCAAATGCAAGGTTGAT-TCTTTCTGAATATTGTAGTCA 105767 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 || | ||| | || || | |||||||||||||| |||| | |||||||| | Sbjct 105766 GAAAGTGTACGACCATCTTCCAGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGA 105707 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 |||| ||||| || ||| |||||| || ||||| | || || || ||| Sbjct 105706 GGGATTCCTTCCTTATCCTGAATTTTGGCTTTGACATTTTCGATCGTGTCCGATGCCTCA 105647 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| |||||||| || || || ||||| ||||| ||||| || ||||| Sbjct 105646 ACTTCCAATGTAATGGTCTTTCCAGTCAATGTTTTAACGAAAATTTGCAT 105597 Score = 104 bits (114), Expect = 2e-17 Identities = 165/233 (71%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATG-AAGAGTGCTCTCCTTTTGAATATTGTAA 38144 |||| ||||| | |||||| | |||||||| ||| || | |||||||||||||| ||| Sbjct 105143 CATT-CCACCACGCAAACGAAGAACCAAATGCAAGGTTGAT-TCCTTTTGAATATTATAA 105086 Query 38145 TCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCG 38204 || || | | ||| | || || | ||| ||||| ||||| || | | || ||||| Sbjct 105085 TCTGAGAGAGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCT 105026 Query 38205 GAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT 38264 | |||| ||||||||| || |||||| || ||||||| | ||||| | Sbjct 105025 GGTGGGATGCCTTCTTTATCTTGAATTTTCGCTTTGACATTCTCAATCGTATCAGAAGCC 104966 Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || || || || || || |||| |||||| || || |||||||| Sbjct 104965 TCTACCTCCAAAGTGATGGTCTTTCCAGTCAGGGTTTTAACAAAAATCTGCAT 104913 >seq1536 Length=3993 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||| |||||||||||| |||||||||||||||||||||||||| || |||||||| Sbjct 1877 AAGCTCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1936 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||| ||||||| Sbjct 1937 TAATCCGTTCATGCGCGTCACTAATTAAATGACGA 1971 >seq1478 Length=8230 Score = 127 bits (140), Expect = 1e-24 Identities = 84/93 (90%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||| |||||| ||||||||||||||||||| || |||||||| Sbjct 4167 AAGCCCGTTCCCTTGGCAGTGGTTACGCTAGATAGTAGATAGGGACAGTGGAAATCTCGT 4226 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 |||||| |||||||||||||||||||||||||| Sbjct 4227 TAATCCATTCATGCGCGTCACTAATTAGATGAC 4259 >seq9711 Length=151070 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||| | || | || | || || ||| || |||||||||||||| || ||| Sbjct 104474 CCACCTCTAAGTCGAAGTACAAGGTGGAGTGTGGATTCTTTTTGAATATTGTAGTCGGAC 104415 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 ||| ||| |||| || | |||||| || || || || || | ||| ||||||| || Sbjct 104414 AAAGTTCGTCCGTCCTCGAGTTGTTTGCCAGCGAAAATCAGTCTTTGCTGATCGGGAGGA 104355 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| |||||||| |||||| |||||| |||| || || || | || || Sbjct 104354 ATGCCCTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCCTCGACC 104295 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| ||| |||||||| || || || || || || ||||||||||| Sbjct 104294 TCTAGTGTTATAGTTTTGCCAGTTAAAGTCTTGACAAATATCTGCAT 104248 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 ||| || ||||| |||||| || || ||||| || ||||| || | || |||| Sbjct 104232 CAAAACTAAATGCAGAGTGGATTCTTTCTGAATGTTATAATCTGAAAGCGTGCGGCCGTC 104173 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 |||| || |||||||| || || | | || ||||| | |||| ||||| || || Sbjct 104172 CTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCTTCCTTATC 104113 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | |||||| || || |||| || || ||| |||||| || ||||| || || Sbjct 104112 CTGAATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAACCTCCAATGTGATGGT 104053 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || |||||||||||||| ||||| || ||||| Sbjct 104052 CTTTCCCGTCAAGGTTTTGACGAAAATTTGCAT 104020 >seq6771 Length=7421 Score = 105 bits (116), Expect = 4e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 ||||| || || || || || |||||||| || |||||||| || | | | | Sbjct 537 CGCAAAACTAAGTGGAGTGTTGATTCCTTTTGGATGTTGTAATCTGAAAGAGTCCTGCCA 478 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || || | ||||| || || || ||||| || |||||||| | ||| | || |||||| Sbjct 477 TCTTCAAGCTGTTTGCCAGCGAAAATTAGACGCTGTTGATCCGGGGGAATTCCCTCTTTG 418 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282 ||| ||||| ||||| |||| | |||||| | ||||||||| | || ||| Sbjct 417 TCCTGGATTTTAGCTTTCACGTTCTCTATAGTATCCGAAGCTTCAACTTCAAGGGTGATA 358 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||||||| || | ||||| ||||| ||||||||| Sbjct 357 GTTTTACCGGTGAGAGTTTTTACGAAGATCTGCATG 322 Score = 98.7 bits (108), Expect = 7e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||||| |||| |||||| || ||||| || || || || || || | | | | Sbjct 310 ACGCAGAACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCGGAAAGAGTTCTGCC 251 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || | |||||| || ||||| ||||| || || ||||| | || | ||||||||| Sbjct 250 ATCTTCAAGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGAGGAATGCCTTCTTT 191 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 ||| || || || ||||||| | ||| ||| | ||||||||| | || || Sbjct 190 GTCTTGGATCTTAGCTTTGACATTCTCTATAGTGTCTGAAGCTTCAACTTCGAGGGTGAT 131 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||||||||| || | ||||| ||||| ||||||||| Sbjct 130 AGTTTTACCAGTGAGAGTTTTTACGAAGATCTGCATG 94 >seq6631 Length=6040 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||| ||| | |||||||||||||||| |||||| Sbjct 846 CTCTCTCTTCAAAGTTCTTTTCAACTTTTCCTTATGGTACTTGTTCGCTATTAGTCTCGT 787 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||| |||| Sbjct 786 GGTCGTATTTAGGCTTA 770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334897658797016