Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq10234 125 9e-24 seq10678 100 4e-16 seq5599 82.4 1e-10 >seq10234 Length=192330 Score = 125 bits (138), Expect = 9e-24 Identities = 225/320 (70%), Gaps = 14/320 (4%) Strand=Plus/Plus Query 62592 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62651 |||| |||||||| ||||| | |||||| ||| | ||||| ||||||||| |||||| Sbjct 2462 TACCAATAGGTCTGTGTCTTTGATTAGATGTTTTCGTCTCTGGGATAGGATAAAAATTAA 2521 Query 62652 TATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGA 62708 || || | ||||| ||||| | |||||||| |||| | || || ||||| Sbjct 2522 CGTCAATGACTTTATCTAGATTGCGGGTGACAATT--TTTG-CGACTGTTTTAAGTTTAT 2578 Query 62709 GAAAATCAAATCGCCC---ATCT--ATTA-CAAACATGTTCAATGCAACAGATGCCAGAT 62762 ||||||||| | |||| |||| |||||||||| | |||| |||||| | || Sbjct 2579 CAAAATCAAAAGTCTTGGTATCTGTATTAACAAACATGTTGACAGCAATAGATGCTAAAT 2638 Query 62763 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 62822 | || || || || || || | | | ||||| | || ||||| || ||||| |||| Sbjct 2639 TGCACACAGCAACTTCTCCAGGACCAGAATATTCAACAATTTCAGTACACAGATTGCTAC 2698 Query 62823 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG-TTACACGCATCCTTATAAAGA 62881 | ||||| || |||| || || ||||| | |||| | ||||| ||| |||||||| Sbjct 2699 ATTTGATAGTGCCTATATGCTGGTGATT-CGATTTTCGATTACATTGATCTTTATAAAGC 2757 Query 62882 ATGAATGGAGTACCAGTTTC 62901 || | || || ||||| || Sbjct 2758 ATATAAGGTGTTCCAGTCTC 2777 Score = 118 bits (130), Expect = 1e-21 Identities = 180/254 (71%), Gaps = 2/254 (1%) Strand=Plus/Plus Query 63473 GCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGA-AAGTAGATTGTACGT 63531 || ||||||| || || ||||| || ||||| || |||||| || || ||||||||| Sbjct 3603 GCGTTAAATAGTGTTGGTGAAGCATGCGTAAAATATCGTTCAGACAAATA-ATTGTACGT 3661 Query 63532 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 63591 ||| |||||| ||| || || || ||||| || || || || | ||| ||||| || Sbjct 3662 CTCTATAGCTTTGTCAATGTCATTTTCGTGAATACCAACAGCCACTCTCATCAACATATG 3721 Query 63592 CTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 63651 ||||| || ||||| || ||| || ||||||| || ||| | | || | ||||| Sbjct 3722 TTGAGGCCTCTCAACTATTTTGCCATTAATTTTCAGCAGATAGCTTCTCTCGAGTGTTTT 3781 Query 63652 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATC 63711 |||||||| ||| || || |||||||| || || || ||| | || | ||| | || Sbjct 3782 AAAACCAATATAATTATAATTGAAGTCTCGATCATATATTATAGCAGAATCCAGTCTCTC 3841 Query 63712 CTTATATTTGTTAA 63725 | || || |||| Sbjct 3842 CGCATTATTCTTAA 3855 Score = 98.7 bits (108), Expect = 1e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 62135 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 62194 || || |||| ||||||| ||| | || ||| ||| || ||||||||||| || | Sbjct 1813 ATATCTTCATCCCATAATCCTCTGGCAGTCAAATCTCGTAGCAGATGCGGATTGACGATG 1872 Query 62195 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 62254 ||| |||||||| ||||| | || ||| ||||| || || |||||||| | || Sbjct 1873 ACAAACTCTCCAGATAATACGCGCCTCACGTAGATATTGCTCGTGTACGGTTCAATGGAT 1932 Query 62255 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 62301 || ||||| || ||||| || || || || || || ||||||||||| Sbjct 1933 TCGTTATTCCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGC 1979 >seq10678 Length=68604 Score = 100 bits (110), Expect = 4e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 33159 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 33218 |||||||| | |||||||| ||||| | |||||||||||||||| |||||| ||| || Sbjct 44964 ACTTCTTCTATAGTCCAAAACGATGCTACAGCCTTTTTATACATATCCCAGATATCAGGA 44905 Query 33219 TATTGAATTGGAAAAATAACAAATCTATTTGGA 33251 |||||||| |||||||| || || | ||||||| Sbjct 44904 TATTGAATAGGAAAAATTACGAAACGATTTGGA 44872 Score = 93.3 bits (102), Expect = 5e-14 Identities = 163/235 (69%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 32910 TTTTCATTACTATCTTTAACATATGTATCAATCA--AAAGACTATACATTTCCGAATGAA 32967 ||||| || ||| ||| ||| || ||||| | ||||| ||||||||| ||||||| Sbjct 45511 TTTTCTTTTGGATCGGTAATATAAGTTTCAATGAGCAAAGA--ATACATTTCGGAATGAA 45454 Query 32968 TGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTG 33027 | || || ||||||||||| || |||||||| || | || || | | | || || Sbjct 45453 TATTCTCTATGGCCATTTGGAAGCCGTAGAAACAACGTGCTTCAGCGACTTTCACCTCCT 45394 Query 33028 TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 33087 || |||| ||| | ||| || || || || || ||| || || ||||| |||| Sbjct 45393 GACTGAATCTTTCAATCAGATTCTCGTTAACAATACCATCAGAAGCGGCGAAAAATGCCA 45334 Query 33088 ATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT---ATTCCAATCATT 33139 | ||||| ||||| ||| ||||||| | ||||||| || |||||| || Sbjct 45333 AGACATGAGAGATAAAGTATCTTTCGTCGGAACTTAGTTTTTCATCCCAATCCTT 45279 Score = 82.4 bits (90), Expect = 1e-10 Identities = 153/223 (69%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 32465 TTTTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCAT 32524 ||||| |||||| ||| || | ||||| ||||| |||||||| ||||| | ||| Sbjct 46291 TTTTTCAAATCCTAATGCAACGAATAATCTGTCTGCAACAAATTCGATATAGTTACACAT 46232 Query 32525 CATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTC 32584 | | |||||||| ||||| || | || || | ||| || | |||||| | ||| Sbjct 46231 GAGTGTGCAATTCATGCCTATCAGCTCGACCGGCAACGCCTGCGTCAAAAATTCCTTTTC 46172 Query 32585 AATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGG--TGGATACAAT 32642 || || || || |||| || ||| |||| ||| ||| | |||||| Sbjct 46171 GATTTCCACAGCATCCATTATGATTGATTTTACACGTTCAAATGACGGCTTTTGTACAAT 46112 Query 32643 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCT 32685 ||||||||||| |||||||| ||||||||||||| |||| Sbjct 46111 G--TGTTTAAACATTAAACATGCAAAATCGCAGTGTAATCCCT 46071 >seq5599 Length=16320 Score = 82.4 bits (90), Expect = 1e-10 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 62426 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 62485 ||| |||||| || || || |||| | |||||| ||| ||||| || |||| ||| Sbjct 14997 CCTTCATATGACTCATAAGGACCTTTTTGGGCAGCTATTTCGCAACTAGCTTCTAGAGCA 14938 Query 62486 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAAT 62545 || ||||||| || || || || | || || | | || || |||| |||||| Sbjct 14937 CCATAATAAAGAGTCTCAAAAATTTGGACGTTGAGTTTATTAGCCTCTTGGCTTTCAAAT 14878 Query 62546 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 62595 ||||| | | | || ||||| |||||||| ||||| ||||||||||| Sbjct 14877 GGATATCTCATTAAGATGAACGCATCTGCTAACCCTTGTACACCAATACC 14828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633535878025600