Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq9711 136 3e-27 seq7200 132 4e-26 seq6771 114 1e-20 >seq9711 Length=151070 Score = 136 bits (150), Expect = 3e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| |||||||| || || ||| | || ||| | || || ||| | || Sbjct 104248 ATGCAGATATTTGTCAAGACTTTAACTGGCAAAACTATAACACTAGAGGTCGAGGCTTCG 104307 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| |||||| ||||| | |||| ||| |||||||| || ||||| || || || Sbjct 104308 GACACAATCGAGAACGTGAAGGCGAAAATTCAA-GACAAAGAGGGCATTCCTCCCGATCA 104366 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || | | ||||| || ||||||||| | || || | || ||| || ||| ||||| Sbjct 104367 GCAAAGACTGATTTTCGCTGGCAAACAACTCGAGGACGGACGAACTTTGTCCGACTACAA 104426 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAAT 25229 |||||||||||||||||| || || | || || | || ||||| ||| || Sbjct 104427 TATTCAAAAAGAATCCACACTCCACCTTGTACTTCGACTTAGAGGTGGAGAT 104478 Score = 118 bits (130), Expect = 9e-22 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || ||||| || || |||||||| | || || || |||| Sbjct 104020 ATGCAAATTTTCGTCAAAACCTTGACGGGAAAGACCATCACATTGGAGGTTGAAGCGTCA 104079 Query 25059 GACACTATCGAG----TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| |||||| ||| |||| |||| ||| || || ||||| || ||||| || Sbjct 104080 GACACGATCGAGAACGTCA---AAGCCAAAATTCAG-GATAAGGAAGGAATCCCACCGGA 104135 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||| || | || || ||||| || || |||| || | ||||| | ||||| Sbjct 104136 TCAGCAGAGGTTGATCTTCGCCGGAAAGCAGCTAGAGGACGGCCGCACGCTTTCAGATTA 104195 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| ||||||||||| || |||||||| | ||||| | ||||| Sbjct 104196 TAACATTCAGAAAGAATCCACTCTGCATTTAGTTTTGAGGCTTCGTGGAGG 104246 >seq7200 Length=105881 Score = 132 bits (146), Expect = 4e-26 Identities = 161/217 (74%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| || ||| | || || ||| |||||||| | ||||| ||| | || Sbjct 105140 AATGCAGATTTTTGTCAAAACTCTCACAGGAAAAACCATCACATTGGAAGTCGAGGCTTC 105199 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||||| ||||| |||| ||||||||| ||| || || ||||| ||||| || | Sbjct 105200 GGACACGATCGAAAACGTCA---AAGCAAAAATTCAA-GATAAGGAAGGAATTCCTCCGG 105255 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | || || | | || ||||| ||||||||| | || || | |||||| | |||| Sbjct 105256 ATCAGCAAAGATTGATCTTTGCTGGCAAACAACTTGAGGACGGTCGCACACTTTCTGATT 105315 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| |||||||||||||| ||| | |||||||| || Sbjct 105316 ACAACATTCAAAAAGAATCAACGTTGCATTTAGTTCT 105352 Score = 125 bits (138), Expect = 6e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || || || ||||| ||||| || || |||| || | || || ||| | Sbjct 104682 ACTATGCAGATTTTCGTGAAGACGTTGACTGGAAAGACCATAACTCTTGAGGTTGAGGCT 104741 Query 25056 TCTGACACTATCGAGTCACTG-AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||||||||| || ||||||| | ||| ||||||||||| || |||||||| Sbjct 104742 TCTGACACTATCGAGAACGTGAAAGCAAAGATTCA-GGACAAAGAAGGCATCCCACCTGA 104800 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | || ||||| || ||||| | ||||| | || || || || || Sbjct 104801 CCAGCAGCGTTTGATCTTTGCTGGAAAACAGCTTGAAGACGGACGTACCTTGTCTGACTA 104860 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| ||||| ||||| || || || || || || Sbjct 104861 CAATATCCAAAAGGAATCGACTCTTCACTTGGTTCT 104896 Score = 118 bits (130), Expect = 9e-22 Identities = 157/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || ||||| || || |||||||| | || || || |||| Sbjct 105369 ATGCAAATTTTTGTTAAAACATTGACGGGAAAGACCATCACATTGGAGGTTGAAGCGTCA 105428 Query 25059 GACACTATCGAG----TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| |||||| ||| |||| |||| ||| || || ||||| || ||||| || Sbjct 105429 GACACGATCGAGAACGTCA---AAGCCAAAATTCAG-GATAAGGAAGGAATCCCACCGGA 105484 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||| || | || || ||||| || || |||| || | ||||| | ||||| Sbjct 105485 TCAGCAGAGGTTGATCTTCGCCGGAAAGCAGCTAGAGGACGGCCGCACGCTTTCAGATTA 105544 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || |||||||||||||| ||| | |||||||| || Sbjct 105545 TAACATTCAAAAAGAATCAACGTTGCATTTAGTTCT 105580 Score = 118 bits (130), Expect = 9e-22 Identities = 157/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || ||||| || || |||| ||| | ||||| ||| | || Sbjct 105597 ATGCAAATTTTCGTTAAAACATTGACTGGAAAGACCATTACATTGGAAGTTGAGGCATCG 105656 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| |||| |||| |||| ||| || || ||||| || || || || Sbjct 105657 GACACGATCGAAAATGTCA---AAGCCAAAATTCAG-GATAAGGAAGGAATCCCTCCAGA 105712 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| || | || |||||||| ||||| | ||||||| ||| || | || || Sbjct 105713 TCAACAGAGGTTAATCTTTGCCGGAAAACAGCTGGAAGATGGTCGTACACTTTCTGACTA 105772 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||| |||||||| || | ||||| || || Sbjct 105773 CAATATTCAGAAAGAATCAACCTTGCATTTGGTTCT 105808 Score = 102 bits (112), Expect = 7e-17 Identities = 154/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| || || |||| || || ||||||| | || || ||| | || Sbjct 104912 AATGCAGATTTTTGTTAAAACCCTGACTGGAAAGACCATCACTTTGGAGGTAGAGGCTTC 104971 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||| || || ||| | || |||| |||| ||| || |||||||| || ||||| || Sbjct 104972 TGATACGATTGAG--AATGTCAAAGCGAAAATTCAA-GATAAAGAAGGCATCCCACCAGA 105028 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||| | | || ||||| || || ||| | || |||| ||| ||| | ||||| Sbjct 105029 TCAGCAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGTCGTACTCTCTCAGATTA 105088 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||||| ||||| || | ||||| || || Sbjct 105089 TAATATTCAAAAGGAATCAACCTTGCATTTGGTTCT 105124 >seq6771 Length=7421 Score = 114 bits (126), Expect = 1e-20 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || ||||| ||| | || |||||| | ||||| ||||||| || | || Sbjct 95 ATGCAGATCTTCGTAAAAACTCTCACTGGTAAAACTATCACCCTCGAAGTTGAAGCTTCA 154 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| ||| | || |||| || | || ||||||||||| ||||| || || Sbjct 155 GACACTATAGAG--AATGTCAAAGCTAAGATCCAA-GACAAAGAAGGCATTCCTCCAGAT 211 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | |||||||| ||||||||| | ||||||| | ||| | ||| || Sbjct 212 CAGCAGCGTCTAATTTTTGCTGGCAAACAACTTGAAGATGGCAGAACTCTTTCCGACTAT 271 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| ||||| ||| | || || Sbjct 272 AACATCCAGAAGGAATCTACGCTTCATCTGGTTCT 306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433263907538840