Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq9711 136 3e-27
seq7200 132 4e-26
seq6771 114 1e-20
>seq9711
Length=151070
Score = 136 bits (150), Expect = 3e-27
Identities = 171/232 (74%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| |||||||| |||||||| || || ||| | || ||| | || || ||| | ||
Sbjct 104248 ATGCAGATATTTGTCAAGACTTTAACTGGCAAAACTATAACACTAGAGGTCGAGGCTTCG 104307
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| |||||| ||||| | |||| ||| |||||||| || ||||| || || ||
Sbjct 104308 GACACAATCGAGAACGTGAAGGCGAAAATTCAA-GACAAAGAGGGCATTCCTCCCGATCA 104366
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|| | | ||||| || ||||||||| | || || | || ||| || ||| |||||
Sbjct 104367 GCAAAGACTGATTTTCGCTGGCAAACAACTCGAGGACGGACGAACTTTGTCCGACTACAA 104426
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAAT 25229
|||||||||||||||||| || || | || || | || ||||| ||| ||
Sbjct 104427 TATTCAAAAAGAATCCACACTCCACCTTGTACTTCGACTTAGAGGTGGAGAT 104478
Score = 118 bits (130), Expect = 9e-22
Identities = 166/231 (72%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || || || ||||| || || |||||||| | || || || ||||
Sbjct 104020 ATGCAAATTTTCGTCAAAACCTTGACGGGAAAGACCATCACATTGGAGGTTGAAGCGTCA 104079
Query 25059 GACACTATCGAG----TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
||||| |||||| ||| |||| |||| ||| || || ||||| || ||||| ||
Sbjct 104080 GACACGATCGAGAACGTCA---AAGCCAAAATTCAG-GATAAGGAAGGAATCCCACCGGA 104135
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
|| ||| || | || || ||||| || || |||| || | ||||| | |||||
Sbjct 104136 TCAGCAGAGGTTGATCTTCGCCGGAAAGCAGCTAGAGGACGGCCGCACGCTTTCAGATTA 104195
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| ||||| ||||||||||| || |||||||| | ||||| | |||||
Sbjct 104196 TAACATTCAGAAAGAATCCACTCTGCATTTAGTTTTGAGGCTTCGTGGAGG 104246
>seq7200
Length=105881
Score = 132 bits (146), Expect = 4e-26
Identities = 161/217 (74%), Gaps = 8/217 (4%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || ||||| || ||| | || || ||| |||||||| | ||||| ||| | ||
Sbjct 105140 AATGCAGATTTTTGTCAAAACTCTCACAGGAAAAACCATCACATTGGAAGTCGAGGCTTC 105199
Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113
||||| ||||| |||| ||||||||| ||| || || ||||| ||||| || |
Sbjct 105200 GGACACGATCGAAAACGTCA---AAGCAAAAATTCAA-GATAAGGAAGGAATTCCTCCGG 105255
Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173
| || || | | || ||||| ||||||||| | || || | |||||| | ||||
Sbjct 105256 ATCAGCAAAGATTGATCTTTGCTGGCAAACAACTTGAGGACGGTCGCACACTTTCTGATT 105315
Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||| |||||||||||||| ||| | |||||||| ||
Sbjct 105316 ACAACATTCAAAAAGAATCAACGTTGCATTTAGTTCT 105352
Score = 125 bits (138), Expect = 6e-24
Identities = 159/216 (74%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055
|| ||||| || || || ||||| ||||| || || |||| || | || || ||| |
Sbjct 104682 ACTATGCAGATTTTCGTGAAGACGTTGACTGGAAAGACCATAACTCTTGAGGTTGAGGCT 104741
Query 25056 TCTGACACTATCGAGTCACTG-AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
||||||||||||||| || ||||||| | ||| ||||||||||| || ||||||||
Sbjct 104742 TCTGACACTATCGAGAACGTGAAAGCAAAGATTCA-GGACAAAGAAGGCATCCCACCTGA 104800
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||| ||||| | || ||||| || ||||| | ||||| | || || || || ||
Sbjct 104801 CCAGCAGCGTTTGATCTTTGCTGGAAAACAGCTTGAAGACGGACGTACCTTGTCTGACTA 104860
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||||| ||||| ||||| || || || || || ||
Sbjct 104861 CAATATCCAAAAGGAATCGACTCTTCACTTGGTTCT 104896
Score = 118 bits (130), Expect = 9e-22
Identities = 157/216 (73%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| || || ||||| || || |||||||| | || || || ||||
Sbjct 105369 ATGCAAATTTTTGTTAAAACATTGACGGGAAAGACCATCACATTGGAGGTTGAAGCGTCA 105428
Query 25059 GACACTATCGAG----TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
||||| |||||| ||| |||| |||| ||| || || ||||| || ||||| ||
Sbjct 105429 GACACGATCGAGAACGTCA---AAGCCAAAATTCAG-GATAAGGAAGGAATCCCACCGGA 105484
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
|| ||| || | || || ||||| || || |||| || | ||||| | |||||
Sbjct 105485 TCAGCAGAGGTTGATCTTCGCCGGAAAGCAGCTAGAGGACGGCCGCACGCTTTCAGATTA 105544
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| |||||||||||||| ||| | |||||||| ||
Sbjct 105545 TAACATTCAAAAAGAATCAACGTTGCATTTAGTTCT 105580
Score = 118 bits (130), Expect = 9e-22
Identities = 157/216 (73%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || || || ||||| || || |||| ||| | ||||| ||| | ||
Sbjct 105597 ATGCAAATTTTCGTTAAAACATTGACTGGAAAGACCATTACATTGGAAGTTGAGGCATCG 105656
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
||||| ||||| |||| |||| |||| ||| || || ||||| || || || ||
Sbjct 105657 GACACGATCGAAAATGTCA---AAGCCAAAATTCAG-GATAAGGAAGGAATCCCTCCAGA 105712
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
|||||| || | || |||||||| ||||| | ||||||| ||| || | || ||
Sbjct 105713 TCAACAGAGGTTAATCTTTGCCGGAAAACAGCTGGAAGATGGTCGTACACTTTCTGACTA 105772
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||||||| |||||||| || | ||||| || ||
Sbjct 105773 CAATATTCAGAAAGAATCAACCTTGCATTTGGTTCT 105808
Score = 102 bits (112), Expect = 7e-17
Identities = 154/216 (71%), Gaps = 6/216 (3%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || ||||| || || |||| || || ||||||| | || || ||| | ||
Sbjct 104912 AATGCAGATTTTTGTTAAAACCCTGACTGGAAAGACCATCACTTTGGAGGTAGAGGCTTC 104971
Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
||| || || ||| | || |||| |||| ||| || |||||||| || ||||| ||
Sbjct 104972 TGATACGATTGAG--AATGTCAAAGCGAAAATTCAA-GATAAAGAAGGCATCCCACCAGA 105028
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
|| ||| | | || ||||| || || ||| | || |||| ||| ||| | |||||
Sbjct 105029 TCAGCAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGTCGTACTCTCTCAGATTA 105088
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||||||||| ||||| || | ||||| || ||
Sbjct 105089 TAATATTCAAAAGGAATCAACCTTGCATTTGGTTCT 105124
>seq6771
Length=7421
Score = 114 bits (126), Expect = 1e-20
Identities = 156/215 (73%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || ||||| ||| | || |||||| | ||||| ||||||| || | ||
Sbjct 95 ATGCAGATCTTCGTAAAAACTCTCACTGGTAAAACTATCACCCTCGAAGTTGAAGCTTCA 154
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|||||||| ||| | || |||| || | || ||||||||||| ||||| || ||
Sbjct 155 GACACTATAGAG--AATGTCAAAGCTAAGATCCAA-GACAAAGAAGGCATTCCTCCAGAT 211
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||||| | |||||||| ||||||||| | ||||||| | ||| | ||| ||
Sbjct 212 CAGCAGCGTCTAATTTTTGCTGGCAAACAACTTGAAGATGGCAGAACTCTTTCCGACTAT 271
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || ||||| ||||| ||| | || ||
Sbjct 272 AACATCCAGAAGGAATCTACGCTTCATCTGGTTCT 306
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433263907538840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |