Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq11630 120 3e-22
seq9420 114 1e-20
seq10678 113 5e-20
>seq11630
Length=199506
Score = 120 bits (132), Expect = 3e-22
Identities = 81/88 (92%), Gaps = 2/88 (2%)
Strand=Plus/Minus
Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326
|||||||||||| |||||||||||||||| ||||| |||||||||| || ||||||||||
Sbjct 198254 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCATCTGGGAGCGTGG 198195
Query 126327 GTTCGAACCCCACACCTGACAAATTATT 126354
|||||||||||||||||| |||||| ||
Sbjct 198194 GTTCGAACCCCACACCTGGCAAATTTTT 198167
>seq9420
Length=87916
Score = 114 bits (126), Expect = 1e-20
Identities = 82/92 (89%), Gaps = 3/92 (3%)
Strand=Plus/Minus
Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TC-GGGAGCGTG 126325
|||||||||||| |||||||||||||||| |||||||||||||||| || |||||||||
Sbjct 26149 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGATCTGGTTCCCATTCTGGGAGCGTG 26090
Query 126326 GGTTCGAACCCCACACCTGACAAATTATTATT 126357
|||||||||||||||| | |||||| || ||
Sbjct 26089 GGTTCGAACCCCACACTTAGCAAATTTTTTTT 26058
>seq10678
Length=68604
Score = 113 bits (124), Expect = 5e-20
Identities = 125/167 (75%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421
|| || || || || | || |||||||||||| ||||| | |||||| || || ||||||
Sbjct 45493 ATATAAGTTTCAATGAGCAAAGAATACATTTCGGAATGAATATTCTCTATGGCCATTTGG 45434
Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481
|| ||||||||||| | ||||| | || | ||| || ||| ||||| || | |||
Sbjct 45433 AAGCCGTAGAAACAACGTGCTTCAGCGACTTTCACCTCCTGACTGAATCTTTCAATCAGA 45374
Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATG 93528
|| || || || |||||||| || || || ||||| ||||| | |||
Sbjct 45373 TTCTCGTTAACAATACCATCAGAAGCGGCGAAAAATGCCAAGACATG 45327
Score = 98.7 bits (108), Expect = 1e-15
Identities = 77/92 (84%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 93593 ACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGA 93652
|||||||| | |||||||||||||||| | || ||||| ||||||||||| || || ||
Sbjct 44964 ACTTCTTCTATAGTCCAAAACGATGCTACAGCCTTTTTATACATATCCCAGATATCAGGA 44905
Query 93653 TATTGAATTGGAAATATGACAAAACGATTAGG 93684
|||||||| ||||| || || |||||||| ||
Sbjct 44904 TATTGAATAGGAAAAATTACGAAACGATTTGG 44873
Score = 91.5 bits (100), Expect = 2e-13
Identities = 161/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 93114 CTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCT 93173
|||| || || || || | || ||||| || || | |||||| | | ||||||||| |
Sbjct 45931 CTTCATCCCGCGAGATGAGTTCGTTGCTAAAAGTAAGACCTGGCATGACTCCTCGTTTTT 45872
Query 93174 TGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATG 93233
| ||||||||||| | |||||||| || || || ||||| || || || || ||||
Sbjct 45871 TCAGCCAAAATATCGCTGCAAAACTGCCGCTGAAGAAAATACCCTCGACTGCCGCGAATG 45812
Query 93234 CCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGG 93293
| | | |||||| | || | || | | ||||||| || || ||||||| |
Sbjct 45811 CGATTACACGTTCTGGGAACGTAGCACTCTCATGATTGATCCAATTCAATGCCCAATTAG 45752
Query 93294 CTTT-TTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344
|||| |||| | | | |||| || || || || || ||||||| ||||||
Sbjct 45751 CTTTCTTTCCT-ACAGAAGGAAGCGTCTCAATCGCATTAAATAAAAAATCTC 45701
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556776324216640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |