Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq11630 120 3e-22 seq9420 114 1e-20 seq10678 113 5e-20 >seq11630 Length=199506 Score = 120 bits (132), Expect = 3e-22 Identities = 81/88 (92%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||| ||||| |||||||||| || |||||||||| Sbjct 198254 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCATCTGGGAGCGTGG 198195 Query 126327 GTTCGAACCCCACACCTGACAAATTATT 126354 |||||||||||||||||| |||||| || Sbjct 198194 GTTCGAACCCCACACCTGGCAAATTTTT 198167 >seq9420 Length=87916 Score = 114 bits (126), Expect = 1e-20 Identities = 82/92 (89%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TC-GGGAGCGTG 126325 |||||||||||| |||||||||||||||| |||||||||||||||| || ||||||||| Sbjct 26149 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGATCTGGTTCCCATTCTGGGAGCGTG 26090 Query 126326 GGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||||||||| | |||||| || || Sbjct 26089 GGTTCGAACCCCACACTTAGCAAATTTTTTTT 26058 >seq10678 Length=68604 Score = 113 bits (124), Expect = 5e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || || || || || | || |||||||||||| ||||| | |||||| || || |||||| Sbjct 45493 ATATAAGTTTCAATGAGCAAAGAATACATTTCGGAATGAATATTCTCTATGGCCATTTGG 45434 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || ||||||||||| | ||||| | || | ||| || ||| ||||| || | ||| Sbjct 45433 AAGCCGTAGAAACAACGTGCTTCAGCGACTTTCACCTCCTGACTGAATCTTTCAATCAGA 45374 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATG 93528 || || || || |||||||| || || || ||||| ||||| | ||| Sbjct 45373 TTCTCGTTAACAATACCATCAGAAGCGGCGAAAAATGCCAAGACATG 45327 Score = 98.7 bits (108), Expect = 1e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 93593 ACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGA 93652 |||||||| | |||||||||||||||| | || ||||| ||||||||||| || || || Sbjct 44964 ACTTCTTCTATAGTCCAAAACGATGCTACAGCCTTTTTATACATATCCCAGATATCAGGA 44905 Query 93653 TATTGAATTGGAAATATGACAAAACGATTAGG 93684 |||||||| ||||| || || |||||||| || Sbjct 44904 TATTGAATAGGAAAAATTACGAAACGATTTGG 44873 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 93114 CTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCT 93173 |||| || || || || | || ||||| || || | |||||| | | ||||||||| | Sbjct 45931 CTTCATCCCGCGAGATGAGTTCGTTGCTAAAAGTAAGACCTGGCATGACTCCTCGTTTTT 45872 Query 93174 TGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATG 93233 | ||||||||||| | |||||||| || || || ||||| || || || || |||| Sbjct 45871 TCAGCCAAAATATCGCTGCAAAACTGCCGCTGAAGAAAATACCCTCGACTGCCGCGAATG 45812 Query 93234 CCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGG 93293 | | | |||||| | || | || | | ||||||| || || ||||||| | Sbjct 45811 CGATTACACGTTCTGGGAACGTAGCACTCTCATGATTGATCCAATTCAATGCCCAATTAG 45752 Query 93294 CTTT-TTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 |||| |||| | | | |||| || || || || || ||||||| |||||| Sbjct 45751 CTTTCTTTCCT-ACAGAAGGAAGCGTCTCAATCGCATTAAATAAAAAATCTC 45701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556776324216640