Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq6771 158 1e-33 seq7200 150 2e-31 seq9711 127 2e-24 seq10900 113 4e-20 seq9876 84.2 2e-11 >seq6771 Length=7421 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || |||||| | ||||||||||| |||| |||||||| ||| | | Sbjct 323 ATGCAGATCTTCGTAAAAACTCTCACCGGTAAAACTATCACCCTTGAAGTTGAAGCTTCG 382 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | | ||| ||||| || ||||| ||||| ||||| || |||||| Sbjct 383 GATACTATAGAGAACGTGAAAGCTAAAATCCAGGACAAAGAGGGAATTCCCCCGGATCAA 442 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || ||||||||| | || ||| | | || | || ||||||||| Sbjct 443 CAGCGTCTAATTTTCGCTGGCAAACAGCTTGAAGATGGCAGGACTCTTTCAGATTACAAC 502 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||| ||||| || | || |||||||||||| | |||||||| Sbjct 503 ATCCAAAAGGAATCAACACTCCACTTAGTTTTGCGACTTCGCGGAGG 549 >seq7200 Length=105881 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| |||||| | || || ||||| |||| | ||||| || | | Sbjct 105141 ATGCAGATTTTTGTCAAAACTCTCACAGGAAAAACCATCACATTGGAAGTCGAGGCTTCG 105200 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | ||||| |||||||||||| ||||| || ||||| || ||||| Sbjct 105201 GACACGATCGAAAACGTCAAAGCAAAAATTCAAGATAAGGAAGGAATTCCTCCGGATCAG 105260 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| |||||||| | ||||| ||||| | || ||||||||| Sbjct 105261 CAAAGATTGATCTTTGCTGGCAAACAACTTGAGGACGGTCGCACACTTTCTGATTACAAC 105320 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||||||||| || | ||||||||| | |||||||| || ||| Sbjct 105321 ATTCAAAAAGAATCAACGTTGCATTTAGTTCTCCGATTGCGTGGTGGT 105368 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||||||||| || || || || || |||| | || || ||| | | Sbjct 105369 ATGCAAATTTTTGTTAAAACATTGACGGGAAAGACCATCACATTGGAGGTTGAAGCGTCA 105428 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | ||||| |||||||| || ||||| || || ||||| ||||| Sbjct 105429 GACACGATCGAGAACGTCAAAGCCAAAATTCAGGATAAGGAAGGAATCCCACCGGATCAG 105488 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || ||||| || ||| ||||||| |||||| | || ||||| ||| Sbjct 105489 CAGAGGTTGATCTTCGCCGGAAAGCAGCTAGAGGACGGCCGCACGCTTTCAGATTATAAC 105548 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||||||||| || | ||||||||| | || ||||| || ||| Sbjct 105549 ATTCAAAAAGAATCAACGTTGCATTTAGTTCTCCGTTTGCGTGGTGGT 105596 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| |||||||| || || || || || | || | ||||| || | | Sbjct 105597 ATGCAAATTTTCGTTAAAACATTGACTGGAAAGACCATTACATTGGAAGTTGAGGCATCG 105656 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || ||||| |||||||| || ||||| || || || || |||||| Sbjct 105657 GACACGATCGAAAATGTCAAAGCCAAAATTCAGGATAAGGAAGGAATCCCTCCAGATCAA 105716 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || |||||||| |||||| | || ||| || || | || || ||||| Sbjct 105717 CAGAGGTTAATCTTTGCCGGAAAACAGCTGGAAGATGGTCGTACACTTTCTGACTACAAT 105776 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| |||||||| ||| | ||||| ||| | || ||||| || ||| Sbjct 105777 ATTCAGAAAGAATCAACCTTGCATTTGGTTCTCCGTTTGCGTGGTGGT 105824 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||||||||| | || || || || ||||| | || || || | | Sbjct 104913 ATGCAGATTTTTGTTAAAACCCTGACTGGAAAGACCATCACTTTGGAGGTAGAGGCTTCT 104972 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || ||||| ||||||||||| || || || || ||||| ||||| Sbjct 104973 GATACGATTGAGAATGTCAAAGCGAAAATTCAAGATAAAGAAGGCATCCCACCAGATCAG 105032 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || || || | |||||| || || |||| ||||| || Sbjct 105033 CAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGTCGTACTCTCTCAGATTATAAT 105092 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| ||||| ||| | ||||| ||| | || ||||| || || Sbjct 105093 ATTCAAAAGGAATCAACCTTGCATTTGGTTCTTCGTTTGCGTGGTGG 105139 >seq9711 Length=151070 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| || || || || || |||| | || || ||| | | Sbjct 104020 ATGCAAATTTTCGTCAAAACCTTGACGGGAAAGACCATCACATTGGAGGTTGAAGCGTCA 104079 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | ||||| |||||||| || ||||| || || ||||| ||||| Sbjct 104080 GACACGATCGAGAACGTCAAAGCCAAAATTCAGGATAAGGAAGGAATCCCACCGGATCAG 104139 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || ||||| || ||| ||||||| |||||| | || ||||| ||| Sbjct 104140 CAGAGGTTGATCTTCGCCGGAAAGCAGCTAGAGGACGGCCGCACGCTTTCAGATTATAAC 104199 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| ||||||||||| | |||||||||||| | | || |||||| Sbjct 104200 ATTCAGAAAGAATCCACTCTGCATTTAGTTTTGAGGCTTCGTGGAGGT 104247 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||||||||||||| | || || ||||| | || | || || ||| | | Sbjct 103792 ATGCAGATTTTTGTTAAAACTCTCACTGGCAAAACCATTACATTGGAGGTTGAAGCTTCG 103851 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || ||||| ||||||||||| ||||| || || || || ||||| Sbjct 103852 GACACAATTGAAAATGTCAAAGCCAAAATTCAAGATAAGGAAGGAATCCCTCCGGATCAG 103911 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || || ||||| | || ||| ||| || | ||||| |||||| Sbjct 103912 CAGAGATTAATCTTCGCTGGAAAACAACTGGAAGATGGCCGTACACTTTCCGACTACAAC 103971 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| |||||||| ||| | ||||| ||| | || ||||| || ||| Sbjct 103972 ATTCAGAAAGAATCGACCTTGCATTTGGTTCTCCGTTTGCGTGGTGGT 104019 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || |||||||| || ||||| | || || || || || | | Sbjct 104248 ATGCAGATATTTGTCAAGACTTTAACTGGCAAAACTATAACACTAGAGGTCGAGGCTTCG 104307 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || |||||||||||||| ||||| ||||| |||||||| Sbjct 104308 GACACAATCGAGAACGTGAAGGCGAAAATTCAAGACAAAGAGGGCATTCCTCCCGATCAG 104367 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || || || |||||||| | ||||| || || | ||||| ||||| Sbjct 104368 CAAAGACTGATTTTCGCTGGCAAACAACTCGAGGACGGACGAACTTTGTCCGACTACAAT 104427 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||||||||||||||| Sbjct 104428 ATTCAAAAAGAATCCAC 104444 >seq10900 Length=227893 Score = 113 bits (124), Expect = 4e-20 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || ||||| || |||| || || ||||| || | Sbjct 197415 ATGCAGATCTTCGTGAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTGGAGGCCTCT 197356 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | |||| || ||||| || ||||| || |||||||| ||||| Sbjct 197355 GATACCATCGAGAACGTCAAGGCTAAGATTCAGGATAAGGAAGGAATTCCACCGGATCAG 197296 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || || |||||||| |||||||| |||||| | || ||||||||| Sbjct 197295 CAGAGACTCATCTTCGCTGGCAAACAACTAGAGGATGGACGCACCCTTTCAGATTACAAC 197236 Query 22399 ATTCAAAAAG 22408 |||||||||| Sbjct 197235 ATTCAAAAAG 197226 >seq9876 Length=23795 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 || ||||| || ||||| ||| | | || ||||| ||||| || || || ||| | | Sbjct 12831 GGAATTCCGCCAGATCAGCAAAGATTGATCTTTGCTGGCAAGCAATTGGAAGATGGCAGG 12890 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGC 22440 || | || || |||||||||||||| ||||| || ||||||| || ||||| ||||| Sbjct 12891 ACATTGTCGGACTACAACATTCAAAAGGAATCTACTTTACATTTGGTGTTGCGCTTGCGA 12950 Query 22441 GGAGGT 22446 || ||| Sbjct 12951 GGCGGT 12956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419665919080840