Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq9711 179 7e-40 seq6771 170 4e-37 seq10900 167 4e-36 seq7200 158 2e-33 seq993 109 1e-18 >seq9711 Length=151070 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| | ||| || || || || ||||| ||||| || ||||||||||| || Sbjct 104246 CCTCCACGAAGCCTCAAAACTAAATGCAGAGTGGATTCTTTCTGAATGTTATAATCTGAA 104187 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || |||| |||||| |||||||| || | || || || || ||||| Sbjct 104186 AGCGTGCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGG 104127 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| || ||||| || || |||||| |||||| ||||||| | ||| || Sbjct 104126 ATTCCTTCCTTATCCTGAATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAACC 104067 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||| |||||||| | ||| |||||||| || ||||| Sbjct 104066 TCCAATGTGATGGTCTTTCCCGTCAAGGTTTTGACGAAAATTTGCAT 104020 Score = 141 bits (156), Expect = 2e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 68231 ATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATC 68290 || ||| || | ||| || | ||| | ||| || ||||| |||||||| || || || || Sbjct 104478 ATCTCCACCTCTAAGTCGAAGTACAAGGTGGAGTGTGGATTCTTTTTGAATATTGTAGTC 104419 Query 68291 GGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGG 68350 ||| | || | || || || | || || || ||||| || |||||||| || ||||| Sbjct 104418 GGACAAAGTTCGTCCGTCCTCGAGTTGTTTGCCAGCGAAAATCAGTCTTTGCTGATCGGG 104359 Query 68351 TGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTC 68410 |||||||| || ||||||||||| || ||||| ||| |||||| ||||| | | || Sbjct 104358 AGGAATGCCCTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCCTC 104299 Query 68411 TACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || | || || ||||| || || | |||||||| ||||||||||| Sbjct 104298 GACCTCTAGTGTTATAGTTTTGCCAGTTAAAGTCTTGACAAATATCTGCAT 104248 >seq6771 Length=7421 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||||||||| |||| |||| || ||||| || || || ||||||||||| ||||| Sbjct 321 CCTCCGCGAAGACGCAGAACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCGGAA 262 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || |||||||| | || || || || || || || | || || || || ||| Sbjct 261 AGAGTTCTGCCATCTTCAAGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGAGGA 202 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||| |||||||| ||||| || ||||| ||| || ||||||| | ||| ||| Sbjct 201 ATGCCTTCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATAGTGTCTGAAGCTTCAACT 142 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| ||||| || ||||| || || ||||| |||||||| Sbjct 141 TCGAGGGTGATAGTTTTACCAGTGAGAGTTTTTACGAAGATCTGCAT 95 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||||||||| ||||| || ||||| || || || || ||||||||||| ||||| || Sbjct 549 CCTCCGCGAAGTCGCAAAACTAAGTGGAGTGTTGATTCCTTTTGGATGTTGTAATCTGAA 490 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || ||||| |||||||| | ||| || || ||||| || || | ||||| || || ||| Sbjct 489 AGAGTCCTGCCATCTTCAAGCTGTTTGCCAGCGAAAATTAGACGCTGTTGATCCGGGGGA 430 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || || ||||| || || || || || ||| ||| || || || | | ||| ||| Sbjct 429 ATTCCCTCTTTGTCCTGGATTTTAGCTTTCACGTTCTCTATAGTATCCGAAGCTTCAACT 370 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| ||||| || ||||| || || ||||| |||||||| Sbjct 369 TCAAGGGTGATAGTTTTACCGGTGAGAGTTTTTACGAAGATCTGCAT 323 >seq10900 Length=227893 Score = 167 bits (184), Expect = 4e-36 Identities = 151/190 (79%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 68272 CTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATA 68331 ||||||| ||||| ||||| || || || | ||||| |||| || || || ||||| | Sbjct 197226 CTTTTTGAATGTTGTAATCTGAAAGGGTGCGTCCATCCTCTAGTTGTTTGCCAGCGAAGA 197285 Query 68332 TGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCT 68391 ||||||| || || || |||||||| |||||||| || |||||||| ||||||||| || Sbjct 197286 TGAGTCTCTGCTGATCCGGTGGAATTCCTTCCTTATCCTGAATCTTAGCCTTGACGTTCT 197345 Query 68392 CGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 ||||||| || | | || || || | ||||||||| || |||||||||||||| |||| Sbjct 197346 CGATGGTATCAGAGGCCTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCACGA 197405 Query 68452 ATATCTGCAT 68461 | |||||||| Sbjct 197406 AGATCTGCAT 197415 >seq7200 Length=105881 Score = 158 bits (174), Expect = 2e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 || || || | ||| || |||||||| ||||| ||||| || ||||| | || || || Sbjct 105349 ACTAAATGCAACGTTGATTCTTTTTGAATGTTGTAATCAGAAAGTGTGCGACCGTCCTCA 105290 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | || || || || || || | |||||| || || || ||||| |||||||| |||||| Sbjct 105289 AGTTGTTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAGGAATTCCTTCCTTATCTTGA 105230 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || ||||| |||||| ||||| ||||| | | || |||||||| |||||||||||| Sbjct 105229 ATTTTTGCTTTGACGTTTTCGATCGTGTCCGAAGCCTCGACTTCCAATGTGATGGTTTTT 105170 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || ||||| || ||||| || ||||||||| Sbjct 105169 CCTGTGAGAGTTTTGACAAAAATCTGCATT 105140 Score = 152 bits (168), Expect = 9e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 || || || | ||| || |||||||| ||||||||||| || || || | || || ||| Sbjct 105577 ACTAAATGCAACGTTGATTCTTTTTGAATGTTATAATCTGAAAGCGTGCGGCCGTCCTCT 105518 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| |||||||| || | || || || || ||||| || |||||||| || ||| Sbjct 105517 AGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCTTCCTTATCCTGA 105458 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || || |||||| |||||| ||||||| | ||| || ||||| |||||||| ||| Sbjct 105457 ATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAACCTCCAATGTGATGGTCTTT 105398 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| | || || || || || ||||| Sbjct 105397 CCCGTCAATGTTTTAACAAAAATTTGCAT 105369 Score = 127 bits (140), Expect = 4e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || || || || |||||||| || || || || | || | || ||||| Sbjct 104893 ACCAAGTGAAGAGTCGATTCCTTTTGGATATTGTAGTCAGACAAGGTACGTCCGTCTTCA 104834 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || || || || || | | || ||||| ||||| |||||||| ||||| ||| Sbjct 104833 AGCTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCAGGTGGGATGCCTTCTTTGTCCTGA 104774 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 |||||||| || ||| |||||| ||||| | | || || || | || ||||| ||| Sbjct 104773 ATCTTTGCTTTCACGTTCTCGATAGTGTCAGAAGCCTCAACCTCAAGAGTTATGGTCTTT 104714 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATGCT 68467 || || | ||||| ||||| |||||||| |||| Sbjct 104713 CCAGTCAACGTCTTCACGAAAATCTGCATAGTGCT 104679 >seq993 Length=4284 Score = 109 bits (120), Expect = 1e-18 Identities = 162/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 268246 CTGGAGCATTTTCCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGC 268305 ||| ||||| |||||| |||| || || ||| || |||||| |||||||| || Sbjct 2704 CTGCAGCATGCGCCACATGCCTTCCACGTATTCCTTGGCGAAGCCCCAGTCGCGCTTGGC 2645 Query 268306 GTCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCG 268365 |||| |||||| || |||||| | | ||| ||| ||||| | || | ||| | Sbjct 2644 ATCCAGGTTCCCCAGCTCCAGGCAGTCCAGCTGGCCCAGCTTGATCTTGGCCA--CCGAG 2587 Query 268366 A--GTGATTTTTCGGGTCACGAACGTCTCG-CCACGTAGAGGGCTCTCGTGGTTGAAGAG 268422 ||||| || |||||||||||| || || || || || |||||||| |||||||| || Sbjct 2586 TCGGTGATCTTGCGGGTCACGAAC-TCGCGGCCGCGCAGTGGGCTCTCATGGTTGAACAG 2528 Query 268423 GATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCAC 268467 ||||||| || | | || ||| | || ||| ||||||||||| Sbjct 2527 GATGCCGCTGGAACCAAAGATGTCGTAACTCTCGCGGTAGTTCAC 2483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921482589881920