Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq10593 82.4 7e-11 >seq10593 Length=94130 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 20240 CCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACT 20299 |||||||||||||| | ||| ||||| | || ||||| || |||||||| || ||| Sbjct 1821 CCAGTAACATGAGCGATCATGTAAGTCAGCAGAGAATACGACGCTATGTTAAACGGCACT 1880 Query 20300 CCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACA 20359 |||||||||||||| | |||||||| || || ||| | || |||| || Sbjct 1881 CCCAAACCCATGTCCGCGCTTCTCTGATAGAGTTGCGTGGACAATTCCCCGTTGTTCACG 1940 Query 20360 TAAAATTG-ACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTT 20418 |||||||| || || | || || || || | |||||| | | || |||| || Sbjct 1941 TAAAATTGTACGAAAGCA-TGGCATGGTGGTAATGCCATCTTTGGAATATCAACCGGATT 1999 Query 20419 CCACGCACACATAATGATTCTTCTATCGTGCGGA 20452 ||| || |||| ||||| | ||| || | |||| Sbjct 2000 CCAGGCTGACATTATGATACGTCTGTCCTCCGGA 2033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441305843746240