Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq6771 141 2e-28 seq7200 136 9e-27 seq9711 131 4e-25 >seq6771 Length=7421 Score = 141 bits (156), Expect = 2e-28 Identities = 149/195 (76%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| |||||||| || || || | || || | || ||||| | ||||| || ||||| Sbjct 514 TTCCTTTTGGATGTTGTAATCTGAAAGAGTCCTGCCATCTTCAAGCTGTTTGCCAGCGAA 455 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || |||||||||||| || ||| ||||| ||||| ||||||||||| |||||||| Sbjct 454 AATTAGACGCTGTTGA---TCCGGGGGAATTCCCTCTTTGTCCTGGATTTTAGCTTTCAC 398 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||| ||||||| ||| | ||| ||||| || ||||| || || ||||| ||||| || Sbjct 397 GTTCTCTATAGTATCCGAAGCTTCAACTTCAAGGGTGATAGTTTTACCGGTGAGAGTTTT 338 Query 288459 GACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 337 TACGAAGATCTGCAT 323 >seq7200 Length=105881 Score = 136 bits (150), Expect = 9e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || | || ||| || | |||| || ||| ||||||||||| ||||| | Sbjct 104912 TCCGCCACGTAATCGAAGAACCAAGTGAAGAGTCGATTCCTTTTGGATATTGTAGTCAGA 104853 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || ||||||||||| | |||||||| || ||||||| |||||| || | ||| Sbjct 104852 CAAGGTACGTCCGTCTTCAAGCTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCAGGTGG 104793 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| |||||||| ||||| || || ||||||||||| || |||| || | || || Sbjct 104792 GATGCCTTCTTTGTCCTGAATCTTTGCTTTCACGTTCTCGATAGTGTCAGAAGCCTCAAC 104733 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| || |||| ||||| ||||| |||||||| Sbjct 104732 CTCAAGAGTTATGGTCTTTCCAGTCAACGTCTTCACGAAAATCTGCAT 104685 Score = 125 bits (138), Expect = 2e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || ||||| || | |||||||| ||||| |||| || ||||| ||||| Sbjct 105560 TTCTTTTTGAATGTTATAATCTGAAAGCGTGCGGCCGTCCTCTAGCTGCTTTCCGGCGAA 105501 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| | ||| ||| |||||||||||| |||||||| ||||| ||||| ||||| Sbjct 105500 GATCAACCTCTGCTGATCCGGTGGGATTCCTTCCTTATCCTGAATTTTGGCTTTGACGTT 105441 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || || ||| || || | ||||| ||||| || |||| || || || Sbjct 105440 CTCGATCGTGTCTGACGCTTCAACCTCCAATGTGATGGTCTTTCCCGTCAATGTTTTAAC 105381 Query 288462 GAATATCTGCAT 288473 || || ||||| Sbjct 105380 AAAAATTTGCAT 105369 Score = 120 bits (132), Expect = 7e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || | | ||| || | ||| | || ||| ||||| |||||||| || | Sbjct 105140 TCCACCACGCAAACGAAGAACCAAATGCAAGGTTGATTCCTTTTGAATATTATAATCTGA 105081 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || || || || || | ||| ||||| || ||||||| | ||| ||| ||| Sbjct 105080 GAGAGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGTGG 105021 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| ||||||||||| || ||||||||||| || || || || | ||| | ||||| Sbjct 105020 GATGCCTTCTTTATCTTGAATTTTCGCTTTGACATTCTCAATCGTATCAGAAGCCTCTAC 104961 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || | ||||| ||||| || ||||| || || || || ||||||||| Sbjct 104960 CTCCAAAGTGATGGTCTTTCCAGTCAGGGTTTTAACAAAAATCTGCATT 104912 Score = 107 bits (118), Expect = 5e-18 Identities = 144/198 (73%), Gaps = 12/198 (6%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| || ||||| ||||| | || || || || ||||| | |||||||| || || Sbjct 105788 TTCTTTCTGAATATTGTAGTCAGAAAGTGTACGACCATCTTCCAGCTGTTTTCCGGCAAA 105729 Query 288342 GATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||| | | ||||||| ||||| ||||||||| |||||||| ||||| ||||| || Sbjct 105728 GATTAACCTCTGTTGA---TCTGGAGGGATTCCTTCCTTATCCTGAATTTTGGCTTTGAC 105672 Query 288399 GTTTTCTATAGAATCGCTCGAT---TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGT 288455 ||||| || | || |||| || ||||| | || || ||||| || |||| || Sbjct 105671 ATTTTCGATCGTGTC---CGATGCCTCAACTTCCAATGTAATGGTCTTTCCAGTCAATGT 105615 Query 288456 CTTGACGAATATCTGCAT 288473 || ||||| || ||||| Sbjct 105614 TTTAACGAAAATTTGCAT 105597 >seq9711 Length=151070 Score = 131 bits (144), Expect = 4e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| || || ||||| || | |||||||| ||||| |||| || ||||| ||||| Sbjct 104211 TTCTTTCTGAATGTTATAATCTGAAAGCGTGCGGCCGTCCTCTAGCTGCTTTCCGGCGAA 104152 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| | ||| ||| |||||||||||| |||||||| ||||| ||||| ||||| Sbjct 104151 GATCAACCTCTGCTGATCCGGTGGGATTCCTTCCTTATCCTGAATTTTGGCTTTGACGTT 104092 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || || ||| || || | ||||| ||||| || |||| || ||||| Sbjct 104091 CTCGATCGTGTCTGACGCTTCAACCTCCAATGTGATGGTCTTTCCCGTCAAGGTTTTGAC 104032 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 104031 GAAAATTTGCAT 104020 Score = 123 bits (136), Expect = 6e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 288243 ATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTC 288302 || |||||| | |||| |||||| || || | ||| ||||||||| ||||| ||||| Sbjct 104478 ATCTCCACCTCTAAGTCGAAGTACAAGGTGGAGTGTGGATTCTTTTTGAATATTGTAGTC 104419 Query 288303 GGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATC 288362 || | || |||||||| || | |||||| || ||||| ||||| | || ||| Sbjct 104418 GGACAAAGTTCGTCCGTCCTCGAGTTGTTTGCCAGCGAAAATCAGTCTTTGCTGATCGGG 104359 Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 || || || ||||| || || |||||||| |||||||| || || | || | || Sbjct 104358 AGGAATGCCCTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCCTC 104299 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || || || || | ||||||||| ||||||||||| Sbjct 104298 GACCTCTAGTGTTATAGTTTTGCCAGTTAAAGTCTTGACAAATATCTGCAT 104248 Score = 104 bits (114), Expect = 6e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| || || || ||||||| || || || || ||||| | ||||||||| ||||| Sbjct 103983 TTCTTTCTGAATGTTGTAGTCGGAAAGTGTACGGCCATCTTCCAGTTGTTTTCCAGCGAA 103924 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| | | ||| ||| ||||||||||| ||||| || ||||| ||||| || || Sbjct 103923 GATTAATCTCTGCTGATCCGGAGGGATTCCTTCCTTATCTTGAATTTTGGCTTTGACATT 103864 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | || | ||| || || | || || || || || || ||||| || || Sbjct 103863 TTCAATTGTGTCCGAAGCTTCAACCTCCAATGTAATGGTTTTGCCAGTGAGAGTTTTAAC 103804 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 103803 AAAAATCTGCAT 103792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179470972588208