Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq7200 104 3e-17 seq8311 98.7 1e-15 seq7323 98.7 1e-15 seq10623 95.1 1e-14 seq9711 95.1 1e-14 seq11361 89.7 6e-13 seq11101 87.8 2e-12 seq11025 86.0 7e-12 >seq7200 Length=105881 Score = 104 bits (114), Expect = 3e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41991 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 42050 ||||| | || |||||||| || || |||||||| || ||||| | || || || Sbjct 105586 AAACGGAGAACTAAATGCAACGTTGATTCTTTTTGAATGTTATAATCTGAAAGCGTGCGG 105527 Query 42051 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCC 42110 |||| ||||||||||| || ||||| || | | |||||| || | ||| | | ||| Sbjct 105526 CCGTCCTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCTTCC 105467 Query 42111 TTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGT 42169 || ||| ||| |||| | ||||| || | | |||||| || ||| || || | || Sbjct 105466 TTATCC-TGAATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAACCTCCAATGT 105408 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||| || ||||| | || || ||||| |||||||| Sbjct 105407 GATGGTCTTTCCCGTCAATGTTTTAACAAAAATTTGCAT 105369 Score = 93.3 bits (102), Expect = 5e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 41991 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 42050 ||||| | ||||||||||| || |||||||||||||| ||||| | ||||| || Sbjct 105130 AAACGAAGAACCAAATGCAAGGTTGATTCCTTTTGAATATTATAATCTGAGAGAGTACGA 105071 Query 42051 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCC 42110 | || || || ||||| ||||| || || | || |||||| || | ||| | || || | Sbjct 105070 CCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGTGGGATGC-CTTC 105012 Query 42111 TTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGT 42169 || | ||| |||| | ||||| || | | ||| || | || || || | || Sbjct 105011 TTTATCTTGAATTTTCGCTTTGACATTCTCAATCGTATCAGAAGCCTCTACCTCCAAAGT 104952 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 |||||| || || || || || || ||||| || |||||| Sbjct 104951 GATGGTCTTTCCAGTCAGGGTTTTAACAAAAATCTGCATT 104912 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 |||||||| |||||||| |||| || || || |||| || ||||| || ||||| || Sbjct 104875 TCCTTTTGGATATTGTAGTCAGACAAGGTACGTCCGTCTTCAAGCTGTTTTCCAGCAAAG 104816 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 || | ||||||||||| | ||| | || || |||||| ||| | |||| ||| | | Sbjct 104815 ATCAAACGCTGCTGGTCAGGTGGGATGCCTTCTTTGTCC-TGAATCTTTGCTTTCACGTT 104757 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||| | || || || | || ||||| || || || | |||||| || Sbjct 104756 CTCGATAGTGTCAGAAGCCTCAACCTCAAGAGTTATGGTCTTTCCAGTCAACGTCTTCAC 104697 Query 42197 AAAGATTTGCAT 42208 || || ||||| Sbjct 104696 GAAAATCTGCAT 104685 >seq8311 Length=32289 Score = 98.7 bits (108), Expect = 1e-15 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 || ||||| ||||| |||| | |||||||||| ||||||||||||||||||||| | Sbjct 2113 ATTAAAAAAAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 2172 Query 57055 TACTCACCACTATACTACCGAGGA 57078 |||| ||||||||||||||||||| Sbjct 2173 TACTAACCACTATACTACCGAGGA 2196 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 2659 AAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 2600 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 2599 TAACCACTATACTACCGAGGA 2579 >seq7323 Length=16445 Score = 98.7 bits (108), Expect = 1e-15 Identities = 74/86 (86%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 14595 AAAAAAAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 14536 Query 57058 TCACCACTATACTACCGAGGA-TTGA 57082 | ||||||||||||||||||| |||| Sbjct 14535 TGACCACTATACTACCGAGGACTTGA 14510 >seq10623 Length=275489 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 52714 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 52773 Query 57067 TACTACCGAGGATTG 57081 |||||||||||| || Sbjct 52774 TACTACCGAGGACTG 52788 >seq9711 Length=151070 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055 ||| || ||||||| ||| || || ||||| || ||||| | || || || |||| Sbjct 104232 CAAAACTAAATGCAGAGTGGATTCTTTCTGAATGTTATAATCTGAAAGCGTGCGGCCGTC 104173 Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115 ||||||||||| || ||||| || | | |||||| || | ||| | | ||||| || Sbjct 104172 CTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCTTCCTTATC 104113 Query 42116 CATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGG 42174 | ||| |||| | ||||| || | | |||||| || ||| || || | ||||||| Sbjct 104112 C-TGAATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAACCTCCAATGTGATGG 104054 Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || ||||| | || || || || |||||||| Sbjct 104053 TCTTTCCCGTCAAGGTTTTGACGAAAATTTGCAT 104020 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || |||||||||||||| || | || ||| || |||| || || || || |||||||| Sbjct 104438 TCTTTTTGAATATTGTAGTCGGACAAAGTTCGTCCGTCCTCGAGTTGTTTGCCAGCGAAA 104379 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 || |||| ||||| |||| || | || ||| |||| | ||| |||| | || | | Sbjct 104378 ATCAGTCTTTGCTGATCGGGAGGAATGCCCTCTTTGT-CTTGAATTTTCGCCTTCACGTT 104320 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||| | || || || | || || |||||||| |||| ||||| || Sbjct 104319 CTCGATTGTGTCCGAAGCCTCGACCTCTAGTGTTATAGTTTTGCCAGTTAAAGTCTTGAC 104260 Query 42197 AAAGATTTGCAT 42208 ||| || ||||| Sbjct 104259 AAATATCTGCAT 104248 >seq11361 Length=125498 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 56997 GAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||| ||||| || | | |||||||||| ||||||||||||||||||||| ||| Sbjct 122448 GAAAAAAGATCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 122507 Query 57057 CTCACCACTATACTACCGAGGA 57078 || |||||||||||| |||||| Sbjct 122508 CTAACCACTATACTATCGAGGA 122529 >seq11101 Length=275143 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||| || | | |||||||||| ||||||||||||||||||||| |||| Sbjct 268011 AAAAAAAATCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 268070 Query 57058 TCACCACTATACTACCGAGGA 57078 | |||||||||||| |||||| Sbjct 268071 TAACCACTATACTATCGAGGA 268091 >seq11025 Length=145197 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1084 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 1143 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 1144 TACTATCGAGGA 1155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543130394618240