Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq7200 134 1e-26
seq9711 120 3e-22
seq6771 111 2e-19
seq10900 109 5e-19
seq10234 84.2 2e-11
>seq7200
Length=105881
Score = 134 bits (148), Expect = 1e-26
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
||||| || |||| ||| || | |||| |||||||| ||||| || ||||| || |
Sbjct 104911 CCGCCACGTAATCGAAGAACCAAGTGAAGAGTCGATTCCTTTTGGATATTGTAGTCAGAC 104852
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| ||| || ||||||||||||| || || ||| | || | ||||||||||| || ||
Sbjct 104851 AAGGTACGTCCGTCTTCAAGCTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCAGGTGGG 104792
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395
|| |||||||| || || | | |||||||| || ||| | || ||| || || ||
Sbjct 104791 ATGCCTTCTTTGTCCTG-AATCTTTGCTTTCACGTTCTCGATAGTGTCAGAAGCCTCAAC 104733
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | ||||| |||||| || ||||| || || |||||||| |||||
Sbjct 104732 CTCAAGAGTTATGGTCTTTCCAGTCAACGTCTTCACGAAAATCTGCAT 104685
Score = 132 bits (146), Expect = 5e-26
Identities = 169/230 (73%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || ||||||| || |||| ||| | ||| ||||||||||||||||||||||| |
Sbjct 105368 ACCACCACGCAATCGGAGAACTAAATGCAACGTTGATTCTTTTTGAATGTTGTAATCAGA 105309
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| ||||| |||| ||||| || ||||| ||| | || | | ||||| || |||||
Sbjct 105308 AAGTGTGCGACCGTCCTCAAGTTGTTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAGG 105249
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394
||||||||| || ||||| | |||||||||| || || | || || || || |
Sbjct 105248 AATTCCTTCCTTATCTTG-AATTTTTGCTTTGACGTTTTCGATCGTGTCCGAAGCCTCGA 105190
Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
|||| | || | ||| || || || | |||||| || ||||| ||||||
Sbjct 105189 CTTCCAATGTGATGGTTTTTCCTGTGAGAGTTTTGACAAAAATCTGCATT 105140
Score = 131 bits (144), Expect = 2e-25
Identities = 168/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || ||||| | || |||| ||| | ||| ||||||||||||||||| |||||||
Sbjct 105596 ACCACCACGCAAACGGAGAACTAAATGCAACGTTGATTCTTTTTGAATGTTATAATCTGA 105537
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| ||||| |||| || |||||||| ||||| | || | || |||||| || || ||
Sbjct 105536 AAGCGTGCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGG 105477
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394
|||||||| || || || | |||| ||||| || ||| | || || || || |
Sbjct 105476 GATTCCTTCCTTATCCTG-AATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAA 105418
Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
| || | || | |||||| || ||||| ||||| || |||||||||||
Sbjct 105417 CCTCCAATGTGATGGTCTTTCCCGTCAATGTTTTAACAAAAATTTGCAT 105369
Score = 113 bits (124), Expect = 5e-20
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || ||||| | || || | ||| | || |||||||| ||||| ||||| || |
Sbjct 105824 ACCACCACGCAAACGGAGAACCAAATGCAAGGTTGATTCTTTCTGAATATTGTAGTCAGA 105765
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| || || | ||||| ||||| || |||||| | || | || ||| || || |||||
Sbjct 105764 AAGTGTACGACCATCTTCCAGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGAGG 105705
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394
|||||||| || || || ||||| ||||| ||| || | || || || || |
Sbjct 105704 GATTCCTTCCTTATCCTGAATTTTG-GCTTTGACATTTTCGATCGTGTCCGATGCCTCAA 105646
Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|||| | || | |||||| || ||||| ||||| ||||||||||||||
Sbjct 105645 CTTCCAATGTAATGGTCTTTCCAGTCAATGTTTTAACGAAAATTTGCAT 105597
>seq9711
Length=151070
Score = 120 bits (132), Expect = 3e-22
Identities = 154/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294
|||| ||| | || |||||||| |||||||| ||||||| | ||||| |||| ||
Sbjct 104228 ACTAAATGCAGAGTGGATTCTTTCTGAATGTTATAATCTGAAAGCGTGCGGCCGTCCTCT 104169
Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354
|||||||| ||||| | || | || |||||| || || || |||||||| || || ||
Sbjct 104168 AGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCTTCCTTATCCTGA 104109
Query 64355 ATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413
||||| ||||| || ||| | || || || || || || | || | ||||||
Sbjct 104108 ATTTTG-GCTTTGACGTTCTCGATCGTGTCTGACGCTTCAACCTCCAATGTGATGGTCTT 104050
Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| ||||| ||||| ||||||||||||||
Sbjct 104049 TCCCGTCAAGGTTTTGACGAAAATTTGCAT 104020
Score = 105 bits (116), Expect = 7e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287
|| ||| || || || | || |||||||||||||| ||||| || | | || || |
Sbjct 104463 TCGAAGTACAAGGTGGAGTGTGGATTCTTTTTGAATATTGTAGTCGGACAAAGTTCGTCC 104404
Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347
||| || || || ||||| || |||| || | ||||| ||||||||||| || |||||
Sbjct 104403 GTCCTCGAGTTGTTTGCCAGCGAAAATCAGTCTTTGCTGATCGGGAGGAATGCCCTCTTT 104344
Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407
||||| ||||| ||| || ||| | ||| || || || || |||| ||||
Sbjct 104343 GTCTTGAATTTTCGCCTTCACGTTCTCGATTGTGTCCGAAGCCTCGACCTCTAGTGTTAT 104284
Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| ||||| || ||||| || || || || |||||
Sbjct 104283 AGTTTTGCCAGTTAAAGTCTTGACAAATATCTGCAT 104248
Score = 100 bits (110), Expect = 3e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || ||||| | || || | ||| | ||||||||||| ||||||||||| || |
Sbjct 104019 ACCACCACGCAAACGGAGAACCAAATGCAAGGTCGATTCTTTCTGAATGTTGTAGTCGGA 103960
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| || || | ||||| || || || || || | || | | |||||| || |||||
Sbjct 103959 AAGTGTACGGCCATCTTCCAGTTGTTTTCCAGCGAAGATTAATCTCTGCTGATCCGGAGG 103900
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394
|||||||| || ||||| | |||| ||||| ||| || | ||| || || || |
Sbjct 103899 GATTCCTTCCTTATCTTG-AATTTTGGCTTTGACATTTTCAATTGTGTCCGAAGCTTCAA 103841
Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
| || | || | ||| ||||| || | |||||| || ||||| |||||
Sbjct 103840 CCTCCAATGTAATGGTTTTGCCAGTGAGAGTTTTAACAAAAATCTGCAT 103792
>seq6771
Length=7421
Score = 111 bits (122), Expect = 2e-19
Identities = 154/213 (72%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || ||||||| ||| ||||| || || ||||| || || | | || | | |||
Sbjct 306 AGAACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCGGAAAGAGTTCTGCCATCT 247
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
||||| || ||||| ||| |||| || |||||||| || |||||||| |||||||| |||
Sbjct 246 TCAAGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCT 187
Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| || || ||||| ||| ||| | || || || || ||||| | || | ||
Sbjct 186 TGGATCTTA-GCTTTGACATTCTCTATAGTGTCTGAAGCTTCAACTTCGAGGGTGATAGT 128
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| || || | |||||||||||| || |||||
Sbjct 127 TTTACCAGTGAGAGTTTTTACGAAGATCTGCAT 95
Score = 111 bits (122), Expect = 2e-19
Identities = 145/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| ||||| ||||| ||||||||||||| | || | | ||||||||||| |||||
Sbjct 519 GTTGATTCCTTTTGGATGTTGTAATCTGAAAGAGTCCTGCCATCTTCAAGCTGTTTGCCA 460
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
|| |||| || ||||| || || || |||||||| ||||| || || ||||| |||||
Sbjct 459 GCGAAAATTAGACGCTGTTGATCCGGGGGAATTCCCTCTTTGTCCTGGATTTTA-GCTTT 401
Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425
|| ||| | ||||| || || ||||| | || | || || ||||| | |||
Sbjct 400 CACGTTCTCTATAGTATCCGAAGCTTCAACTTCAAGGGTGATAGTTTTACCGGTGAGAGT 341
Query 64426 TTTTACGAAAATTTGCAT 64443
||||||||| || |||||
Sbjct 340 TTTTACGAAGATCTGCAT 323
>seq10900
Length=227893
Score = 109 bits (120), Expect = 5e-19
Identities = 138/190 (73%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313
||||||||||||||||||||| | |||||| | || || || || ||||| || | |
Sbjct 197226 CTTTTTGAATGTTGTAATCTGAAAGGGTGCGTCCATCCTCTAGTTGTTTGCCAGCGAAGA 197285
Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCT 64373
|||| | |||||| || || ||||||||||| || || || || || ||| || ||
Sbjct 197286 TGAGTCTCTGCTGATCCGGTGGAATTCCTTCCTTATCCTGAATCTTAGCCTTGACGTTCT 197345
Query 64374 CCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433
| | |||||| ||| ||||| || | || | |||||| || || | || || ||||
Sbjct 197346 CGATGGTATCAGAGGCCTCCACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCACGA 197405
Query 64434 AAATTTGCAT 64443
| || |||||
Sbjct 197406 AGATCTGCAT 197415
>seq10234
Length=192330
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 154031 AAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGATTC 154090
||| || || | |||||||| | ||| || | |||||| ||| |||| || | |||||
Sbjct 1875 AAACTCTCCAGATAATACGCGCCTCACGTAGATATTGCTCGTGTACGGTTCAATGGATTC 1934
Query 154091 GTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGAGTT 154150
||| || ||||| || || || || | || || |||||| || | || | || ||
Sbjct 1935 GTTATTCCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTAAAAGCGAATT 1994
Query 154151 TCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGTAGG 154210
| || ||||| || || || | || || || |||||| ||||| | || ||
Sbjct 1995 CCTCACTCCGTGCTTCGCGATCTTCCTCTTCAATTCATCCCAATCCCACAGATCTGTTGG 2054
Query 154211 TTGCACGTTCCACATGTCGTATTG 154234
|| |||||||||||||| |||||
Sbjct 2055 TTTAACGTTCCACATGTCATATTG 2078
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499569003883840
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