Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq9711 116 4e-21
seq7200 114 1e-20
seq6771 111 2e-19
seq10234 93.3 4e-14
>seq9711
Length=151070
Score = 116 bits (128), Expect = 4e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||||||| | ||| ||||| | | | || || || |||||||||||||||
Sbjct 104018 CCACCACGCAAACGGAGAACCAAATGCAAGGTCGATTCTTTCTGAATGTTGTAGTCGGAA 103959
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||||| || || |||||||| || | |||||| | ||| || ||||||||
Sbjct 103958 AGTGTACGGCCATCTTCCAGTTGTTTTCCAGCGAAGATTAATCTCTGCTGATCCGGAGGG 103899
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCAC 138566
|| ||||| || || ||| |||| | ||| | | ||| | ||||| | | || ||
Sbjct 103898 ATTCCTTCCTTATCT-TGAATTTTGGCTTTGACATTTTCAATTGTGTCCGAAGCTTCAAC 103840
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| | || | ||||| ||||| |||||||| ||||||||||||||
Sbjct 103839 CTCCAATGTAATGGTTTTGCCAGTGAGAGTTTTAACAAAAATCTGCAT 103792
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/195 (71%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| || |||||||| ||||||||| || ||| || ||||||||||||||| || |
Sbjct 104441 GATTCTTTTTGAATATTGTAGTCGGACAAAGTTCGTCCGTCCTCGAGTTGTTTGCCAGCG 104382
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539
| || || | || || || ||||| || || |||||||| ||| |||| | || |
Sbjct 104381 AAAATCAGTCTTTGCTGATCGGGAGGAATGCCCTCTTTGTC-TTGAATTTTCGCCTTCAC 104323
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
| || | ||||| | | ||| ||||| | || | ||||| ||||| | ||| ||
Sbjct 104322 GTTCTCGATTGTGTCCGAAGCCTCGACCTCTAGTGTTATAGTTTTGCCAGTTAAAGTCTT 104263
Query 138600 TACAAAAATCTGCAT 138614
||||| ||||||||
Sbjct 104262 GACAAATATCTGCAT 104248
>seq7200
Length=105881
Score = 114 bits (126), Expect = 1e-20
Identities = 166/230 (72%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || ||||| || | ||||||||| | |||| || |||||||||||||| ||
Sbjct 105367 CCACCACGCAATCGGAGAACTAAATGCAACGTTGATTCTTTTTGAATGTTGTAATCAG-- 105310
Query 138448 ATAGTACGCGA--GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505
| ||| |||| |||||| |||||||| || | | |||| | | || || |||||||
Sbjct 105309 AAAGTGTGCGACCGTCCTCAAGTTGTTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAG 105250
Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCC 138564
| || ||||| || || ||| |||||| ||| | | ||| | ||||| | | |||
Sbjct 105249 GAATTCCTTCCTTATCT-TGAATTTTTGCTTTGACGTTTTCGATCGTGTCCGAAGCCTCG 105191
Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| || | || | ||||| || || |||||||| ||||||||||||||
Sbjct 105190 ACTTCCAATGTGATGGTTTTTCCTGTGAGAGTTTTGACAAAAATCTGCAT 105141
Score = 102 bits (112), Expect = 8e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||||||| | ||| ||||| | | |||| ||||||||||| || || ||
Sbjct 105139 CCACCACGCAAACGAAGAACCAAATGCAAGGTTGATTCCTTTTGAATATTATAATCTGAG 105080
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| |||||| ||||| ||||| || || | | |||| | | ||| || || || ||
Sbjct 105079 AGAGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGTGGG 105020
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCAC 138566
|| |||||||| || ||| |||| | ||| | | || | || || | | ||| ||
Sbjct 105019 ATGCCTTCTTTATCT-TGAATTTTCGCTTTGACATTCTCAATCGTATCAGAAGCCTCTAC 104961
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| | || | || || |||||||| ||||| ||||||||||||||
Sbjct 104960 CTCCAAAGTGATGGTCTTTCCAGTCAGGGTTTTAACAAAAATCTGCAT 104913
Score = 98.7 bits (108), Expect = 1e-15
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| || || || | ||| || || | | || |||||||| || |||||||| |
Sbjct 104911 CCGCCACGTAATCGAAGAACCAAGTGAAGAGTCGATTCCTTTTGGATATTGTAGTCAGAC 104852
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||||| ||| || || ||||| || | | |||| | |||||| ||||| || ||
Sbjct 104851 AAGGTACGTCCGTCTTCAAGCTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCAGGTGGG 104792
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCAC 138566
|| ||||||||||| ||| | |||| ||| | | || | ||||| | | ||| ||
Sbjct 104791 ATGCCTTCTTTGTCC-TGAATCTTTGCTTTCACGTTCTCGATAGTGTCAGAAGCCTCAAC 104733
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| | || | || || ||||||| || || || |||||||||||
Sbjct 104732 CTCAAGAGTTATGGTCTTTCCAGTCAACGTCTTCACGAAAATCTGCAT 104685
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||||||| | ||||||||| | |||| || ||||||||||| || ||
Sbjct 105595 CCACCACGCAAACGGAGAACTAAATGCAACGTTGATTCTTTTTGAATGTTATAATCTGAA 105536
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || |||||| || || || |||| |||| | | ||| || ||||| ||
Sbjct 105535 AGCGTGCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGG 105476
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| ||||| || || ||| |||| | ||| | | || | ||||| | || || ||
Sbjct 105475 ATTCCTTCCTTATC-CTGAATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAAC 105417
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| | || | || || || |||| ||||| |||||||| |||||
Sbjct 105416 CTCCAATGTGATGGTCTTTCCCGTCAATGTTTTAACAAAAATTTGCAT 105369
>seq6771
Length=7421
Score = 111 bits (122), Expect = 2e-19
Identities = 166/233 (71%), Gaps = 2/233 (1%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || || | ||||| ||| | ||| | | || ||||| || ||||| ||||||
Sbjct 322 GCCTCCGCGAAGACGCAGAACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCGGA 263
Query 138447 CATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505
| ||| | || | || || |||||||| || | | | ||||||||||| || || ||||
Sbjct 262 AAGAGTTCTGCCA-TCTTCAAGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGAG 204
Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565
| || ||||||||||| ||| || ||| | | || | ||||| | | || |
Sbjct 203 GAATGCCTTCTTTGTCTTGGATCTTAGCTTTGACATTCTCTATAGTGTCTGAAGCTTCAA 144
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618
| |||| || | ||||||||||| ||||||||||| || ||||||||| ||
Sbjct 143 CTTCGAGGGTGATAGTTTTACCAGTGAGAGTTTTTACGAAGATCTGCATGCCT 91
Score = 102 bits (112), Expect = 8e-17
Identities = 166/234 (71%), Gaps = 5/234 (2%)
Strand=Plus/Minus
Query 138389 CGCCTC-GCAAA--CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGC 138445
|||||| || || ||||||||||| || | |||| |||||||| |||||||| ||
Sbjct 551 CGCCTCCGCGAAGTCGCAAAACTAAGTGGAGTGTTGATTCCTTTTGGATGTTGTAATCTG 492
Query 138446 TCATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGA 138504
| ||| | || | || || || ||||| || | | |||||||||||||| |||||
Sbjct 491 AAAGAGTCCTGCCA-TCTTCAAGCTGTTTGCCAGCGAAAATTAGACGCTGTTGATCCGGG 433
Query 138505 GGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564
|| || || |||||||| |||||| ||| | | || | || || | | ||
Sbjct 432 GGAATTCCCTCTTTGTCCTGGATTTTAGCTTTCACGTTCTCTATAGTATCCGAAGCTTCA 373
Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618
|| || | || | |||||||| || ||||||||||| || ||||||||| ||
Sbjct 372 ACTTCAAGGGTGATAGTTTTACCGGTGAGAGTTTTTACGAAGATCTGCATGCCT 319
>seq10234
Length=192330
Score = 93.3 bits (102), Expect = 4e-14
Identities = 145/205 (71%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 153041 AAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAGGTTCAAAGGATTC 153100
|||||| || | || || || |||| || | |||||| ||| | ||||||| ||||||
Sbjct 1875 AAACTCTCCAGATAATACGCGCCTCACGTAGATATTGCTCGTGTACGGTTCAATGGATTC 1934
Query 153101 GTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCACCAACAAAGAATT 153160
|||||| |||| || || ||||| | || || ||||| || | || | |||||
Sbjct 1935 GTTATTCCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTAAAAGCGAATT 1994
Query 153161 CCGCAAGCCGTGC-GCTCGAATGTCGTCCTTCAACGCCTGCCAATCCCACAGCGCCGACG 153219
|| || |||||| | ||| || | |||||| | | |||||||||||| | | |
Sbjct 1995 CCTCACTCCGTGCTTCGCGATCTTCCT-CTTCAATTCATCCCAATCCCACAGATCTGTTG 2053
Query 153220 GTGTCGCGTTCCACATGTCGTACTG 153244
|| | ||||||||||||| || ||
Sbjct 2054 GTTTAACGTTCCACATGTCATATTG 2078
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496187116993920
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