Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_011373.1 Length=46872 Score E Sequences producing significant alignments: (Bits) Value seq7345 237 5e-58 >seq7345 Length=15758 Score = 237 bits (262), Expect = 5e-58 Identities = 392/552 (71%), Gaps = 19/552 (3%) Strand=Plus/Minus Query 23231 CGCAGCGTTTTTCAGGCTTCGGCAGCCATTCGCCTTCGTGAACGCTGTAGGCGGCGACGA 23290 |||||| ||| || |||||||||||| |||||||| || || ||||||||||| || Sbjct 5021 CGCAGC-TTTATC---CTTCGGCAGCCACTCGCCTTCC--AAGGC-GTAGGCGGCGATGA 4969 Query 23291 AGTT--GCGGGCTGCATCTAACTGATTGGCGGGGATGTCTGTGGCAGACCGAACCCCGAA 23348 |||| ||| |||| || | | | | ||| || || || ||| | | || | ||| Sbjct 4968 AGTTCCGCGCGCTG--TCGAGCCGGTCGGCCGGAATATCCTCGGCGGTCACGACGCTGAA 4911 Query 23349 TGCGGCATGGGTCTGTGACCAGATTTTCGCGGTGGCGCGGCGGCGGA-CTTCGACGGGGA 23407 || ||| ||| |||||| | |||||| ||||| | | |||||| Sbjct 4910 CGCCTTATGCACCTGGCTCCAGATGTGGTTCTTGGCGCCTCGGCGAATCGCCGACGGCAG 4851 Query 23408 GGGCGGCTACCTTGCCCTTGATCAGTG-AGCCGAGCATATGGAAGCCGTCGGTGCCGATG 23466 | || || |||||||| | || | | |||| ||| |||||||||||||||||||| Sbjct 4850 GTGCCGC-ACCTTGCCATCGACGACGGCAGCCAGGCAG-TGGAAGCCGTCGGTGCCGATA 4793 Query 23467 GTTTCGCCAACCAGGGTTGCCATCTTGT--TGCTGGAGTCCTCATAGCGACCATGCTTGC 23524 |||| ||||| ||| ||| ||| | |||||| || || |||||||| ||||| Sbjct 4792 GTTTGGCCAATCAGAGTTACCAGGCGGCCCTGCTGG--TCGTCGTAGCGACCGGTCTTGC 4735 Query 23525 GAATCGCAGGCAGCACCTCGGCGGTTACCCACTTCTTGAAGCGCTTGGCTTCGGCCTTGC 23584 | || || || ||||| ||| |||||||||||||||||||| |||| || || ||||| Sbjct 4734 GGATGGCTGGGAGCACTTCGCCGGTTACCCACTTCTTGAAGAGCTTCGCCTCTTGCTTGC 4675 Query 23585 GGCTGCGCAGGATCGCCGAGTACAGCCCAGACTCGTTGATGACCAGCATTTCCTGATCGC 23644 | || |||||||| |||| ||| || |||||||||||||| ||||||||||||| | | Sbjct 4674 GACTACGCAGGATGGCCGCGTATAGGCCAGACTCGTTGATCGCCAGCATTTCCTGGGCTC 4615 Query 23645 CGCCAGGGGTGTGCACATTCTGCATACCCTTTTCGTCTTCATCGAGATTGCGAGTCATCT 23704 | || |||| |||| |||| ||||||||||||| || ||||| || || ||| | Sbjct 4614 CACCGAGGGTACTCACAATCTGAGTACCCTTTTCGTCCTCGTCGAGGTTTCGGCACATGT 4555 Query 23705 GAGGCGCTGCCGGATAGCCTAGAGAAGCAGCCACATCGGTAGCAACGAACCATGGTTGGT 23764 || | | || |||| || || | |||| ||| |||||||| || | | Sbjct 4554 TGAACGAATCGCGGTATTGGAGAGCTGCCGCGATGTCGGCAGCGACGAACCAAGGATCGC 4495 Query 23765 CGTCGATCAGCA 23776 |||||||||||| Sbjct 4494 CGTCGATCAGCA 4483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149847201657888