Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22]
12,136 sequences; 257,976,923 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq9711 127 1e-24
seq6771 127 1e-24
seq7200 125 5e-24
>seq9711
Length=151070
Score = 127 bits (140), Expect = 1e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| ||||| | | ||| ||||| | ||| || ||||| || |||||||| |||
Sbjct 104018 CCACCACGCAAACGGAGAACCAAATGCAAGGTCGATTCTTTCTGAATGTTGTAGTCGGAA 103959
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| | | | ||||| | |||||| |||||| | || || | ||| || || ||
Sbjct 103958 AGTGTACGGCCATCTTCCAGTTGTTTTCCAGCGAAGATTAATCTCTGCTGATCCGGAGGG 103899
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
||||||||||| || ||||||| ||| ||| |||| || || || | ||| ||
Sbjct 103898 ATTCCTTCCTTATCTTGAATTTTGGCTTTGACATTTTCAATTGTGTCCGAAGCTTCAACC 103839
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| || ||||||||||| || || |||||||| |||||||| ||||||
Sbjct 103838 TCCAATGTAATGGTTTTGCCAGTGAGAGTTTTAACAAAAATCTGCATA 103791
Score = 96.9 bits (106), Expect = 2e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 14962 CTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCG 15021
|| ||||||||||| || || || ||||| || ||||| ||||| || | | ||
Sbjct 104234 CTCAAAACTAAATGCAGAGTGGATTCTTTCTGAATGTTATAATCTGAAAGCGTGCGGCCG 104175
Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081
|| |||| || || || ||| | ||||| | ||| || || ||| |||||||||||
Sbjct 104174 TCCTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCTTCCTTA 104115
Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141
|| ||||||| ||| || | || || || || ||| || || || || |||
Sbjct 104114 TCCTGAATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAACCTCCAATGTGATG 104055
Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| || || |||| ||||| || ||||||||||||
Sbjct 104054 GTCTTTCCCGTCAAGGTTTTGACGAAAATTTGCATA 104019
>seq6771
Length=7421
Score = 127 bits (140), Expect = 1e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008
||| || || | || |||||||| || || || || || ||||| |||||||||||
Sbjct 550 GCCTCCGCGAAGTCGCAAAACTAAGTGGAGTGTTGATTCCTTTTGGATGTTGTAATCTGA 491
Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068
||| | || | ||||| | |||||||||||| | || | ||||||||| || ||
Sbjct 490 AAGAGTCCTGCCATCTTCAAGCTGTTTGCCAGCGAAAATTAGACGCTGTTGATCCGGGGG 431
Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128
|||||| || ||||| ||||| ||| || | ||||||||||| | ||| ||
Sbjct 430 AATTCCCTCTTTGTCCTGGATTTTAGCTTTCACGTTCTCTATAGTATCCGAAGCTTCAAC 371
Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| | ||| || |||||||| || ||||||||||| || || |||||
Sbjct 370 TTCAAGGGTGATAGTTTTACCGGTGAGAGTTTTTACGAAGATCTGCAT 323
Score = 113 bits (124), Expect = 3e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026
||| | |||||| ||||| || || || ||||| || ||| ||| |||| | |||||
Sbjct 304 AACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCGGAAAGAGTTCTGCCATCTTC 245
Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086
| |||||||||||| | || | |||||| || || ||||| ||||| |||||
Sbjct 244 AAGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCTTG 185
Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146
|| || ||| ||| | |||||||| || | ||| || || | ||| || |||||
Sbjct 184 GATCTTAGCTTTGACATTCTCTATAGTGTCTGAAGCTTCAACTTCGAGGGTGATAGTTTT 125
Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
||| || ||||||||||| || || |||||
Sbjct 124 ACCAGTGAGAGTTTTTACGAAGATCTGCAT 95
>seq7200
Length=105881
Score = 125 bits (138), Expect = 5e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| ||||||| | ||||||||| | || || |||||||| |||||||||||
Sbjct 105367 CCACCACGCAATCGGAGAACTAAATGCAACGTTGATTCTTTTTGAATGTTGTAATCAGAA 105308
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| | | |||| || | |||||||||||| | ||||| | || || || |||
Sbjct 105307 AGTGTGCGACCGTCCTCAAGTTGTTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAGGA 105248
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
||||||||||| || |||||| ||| || |||| || || || | || ||
Sbjct 105247 ATTCCTTCCTTATCTTGAATTTTTGCTTTGACGTTTTCGATCGTGTCCGAAGCCTCGACT 105188
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || || |||||||| ||||| |||||||| |||||||| |||||
Sbjct 105187 TCCAATGTGATGGTTTTTCCTGTGAGAGTTTTGACAAAAATCTGCAT 105141
Score = 105 bits (116), Expect = 5e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| ||||| | | ||||||||| | || || |||||||| ||||| |||||
Sbjct 105595 CCACCACGCAAACGGAGAACTAAATGCAACGTTGATTCTTTTTGAATGTTATAATCTGAA 105536
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| | | |||| |||| || || || ||| | ||||| | ||| || || |||
Sbjct 105535 AGCGTGCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGG 105476
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
||||||||||| || ||||||| ||| || | || || || || ||| ||
Sbjct 105475 ATTCCTTCCTTATCCTGAATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAACC 105416
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| || || ||||| || || |||| ||||| |||||||||||||||
Sbjct 105415 TCCAATGTGATGGTCTTTCCCGTCAATGTTTTAACAAAAATTTGCATA 105368
Score = 95.1 bits (104), Expect = 9e-15
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| ||||| | | ||| ||||| | ||| || ||||| || || ||||| ||
Sbjct 105823 CCACCACGCAAACGGAGAACCAAATGCAAGGTTGATTCTTTCTGAATATTGTAGTCAGAA 105764
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| | | | ||||| | ||||| || || | || || | |||||| || ||
Sbjct 105763 AGTGTACGACCATCTTCCAGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGAGGG 105704
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTT-TCTAC 15128
||||||||||| || ||||||| ||| ||| |||| || || || | || || ||
Sbjct 105703 ATTCCTTCCTTATCCTGAATTTTGGCTTTGACATTTTCGATCGTGTC-CGATGCCTCAAC 105645
Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| || |||||||| || || |||| ||||| || ||||||||||||
Sbjct 105644 TTCCAATGTAATGGTCTTTCCAGTCAATGTTTTAACGAAAATTTGCATA 105596
Score = 86.0 bits (94), Expect = 4e-12
Identities = 172/250 (69%), Gaps = 10/250 (4%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
|| || || |||| | ||| || ||||| || || || ||||| || ||||| || |
Sbjct 104911 CCGCCACGTAATCGAAGAACCAAGTGAAGAGTCGATTCCTTTTGGATATTGTAGTCA--G 104854
Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
| || || ||||||| | ||||| ||||| | ||||||||||| ||||| ||
Sbjct 104853 ACAAGGTACGTCCGTCTTCAAGCTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCAGGTG 104794
Query 15068 GAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126
| || ||||| ||||| ||| ||||| ||| || | || ||||| || | ||
Sbjct 104793 GGATGCCTTCTTTGTCCTGAATCTTTGC-TTTCACGTTCTCGATAGTGTCAGAAGCCTCA 104735
Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA----TTTGA 15182
|| || | || ||||| || || |||| || || || ||||| |||||| | ||
Sbjct 104734 ACCTCAAGAGTTATGGTCTTTCCAGTCAACGTCTTCACGAAAATCTGCATAGTGCTCTGT 104675
Query 15183 AATAAATTTT 15192
|||||| |||
Sbjct 104674 AATAAAGTTT 104665
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357339139042760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |