Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monomorium_20pharaonis_20[refseq_20GCF_5F000980195.1_202015-04-22] 12,136 sequences; 257,976,923 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq9711 127 1e-24 seq6771 127 1e-24 seq7200 125 5e-24 >seq9711 Length=151070 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| ||||| | | ||| ||||| | ||| || ||||| || |||||||| ||| Sbjct 104018 CCACCACGCAAACGGAGAACCAAATGCAAGGTCGATTCTTTCTGAATGTTGTAGTCGGAA 103959 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| | |||||| |||||| | || || | ||| || || || Sbjct 103958 AGTGTACGGCCATCTTCCAGTTGTTTTCCAGCGAAGATTAATCTCTGCTGATCCGGAGGG 103899 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || ||||||| ||| ||| |||| || || || | ||| || Sbjct 103898 ATTCCTTCCTTATCTTGAATTTTGGCTTTGACATTTTCAATTGTGTCCGAAGCTTCAACC 103839 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||||||||| || || |||||||| |||||||| |||||| Sbjct 103838 TCCAATGTAATGGTTTTGCCAGTGAGAGTTTTAACAAAAATCTGCATA 103791 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 14962 CTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCG 15021 || ||||||||||| || || || ||||| || ||||| ||||| || | | || Sbjct 104234 CTCAAAACTAAATGCAGAGTGGATTCTTTCTGAATGTTATAATCTGAAAGCGTGCGGCCG 104175 Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 || |||| || || || ||| | ||||| | ||| || || ||| ||||||||||| Sbjct 104174 TCCTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATTCCTTCCTTA 104115 Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141 || ||||||| ||| || | || || || || ||| || || || || ||| Sbjct 104114 TCCTGAATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAACCTCCAATGTGATG 104055 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || |||| ||||| || |||||||||||| Sbjct 104054 GTCTTTCCCGTCAAGGTTTTGACGAAAATTTGCATA 104019 >seq6771 Length=7421 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008 ||| || || | || |||||||| || || || || || ||||| ||||||||||| Sbjct 550 GCCTCCGCGAAGTCGCAAAACTAAGTGGAGTGTTGATTCCTTTTGGATGTTGTAATCTGA 491 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 ||| | || | ||||| | |||||||||||| | || | ||||||||| || || Sbjct 490 AAGAGTCCTGCCATCTTCAAGCTGTTTGCCAGCGAAAATTAGACGCTGTTGATCCGGGGG 431 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 |||||| || ||||| ||||| ||| || | ||||||||||| | ||| || Sbjct 430 AATTCCCTCTTTGTCCTGGATTTTAGCTTTCACGTTCTCTATAGTATCCGAAGCTTCAAC 371 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| || |||||||| || ||||||||||| || || ||||| Sbjct 370 TTCAAGGGTGATAGTTTTACCGGTGAGAGTTTTTACGAAGATCTGCAT 323 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | |||||| ||||| || || || ||||| || ||| ||| |||| | ||||| Sbjct 304 AACCAGATGAAGCGTAGATTCCTTCTGGATGTTATAGTCGGAAAGAGTTCTGCCATCTTC 245 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | |||||||||||| | || | |||||| || || ||||| ||||| ||||| Sbjct 244 AAGTTGTTTGCCAGCAAAAATTAGACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCTTG 185 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || || ||| ||| | |||||||| || | ||| || || | ||| || ||||| Sbjct 184 GATCTTAGCTTTGACATTCTCTATAGTGTCTGAAGCTTCAACTTCGAGGGTGATAGTTTT 125 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||| || ||||||||||| || || ||||| Sbjct 124 ACCAGTGAGAGTTTTTACGAAGATCTGCAT 95 >seq7200 Length=105881 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| ||||||| | ||||||||| | || || |||||||| ||||||||||| Sbjct 105367 CCACCACGCAATCGGAGAACTAAATGCAACGTTGATTCTTTTTGAATGTTGTAATCAGAA 105308 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | |||| || | |||||||||||| | ||||| | || || || ||| Sbjct 105307 AGTGTGCGACCGTCCTCAAGTTGTTTGCCAGCAAAGATCAATCTTTGCTGATCCGGAGGA 105248 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || |||||| ||| || |||| || || || | || || Sbjct 105247 ATTCCTTCCTTATCTTGAATTTTTGCTTTGACGTTTTCGATCGTGTCCGAAGCCTCGACT 105188 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || |||||||| ||||| |||||||| |||||||| ||||| Sbjct 105187 TCCAATGTGATGGTTTTTCCTGTGAGAGTTTTGACAAAAATCTGCAT 105141 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| ||||| | | ||||||||| | || || |||||||| ||||| ||||| Sbjct 105595 CCACCACGCAAACGGAGAACTAAATGCAACGTTGATTCTTTTTGAATGTTATAATCTGAA 105536 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | |||| |||| || || || ||| | ||||| | ||| || || ||| Sbjct 105535 AGCGTGCGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGG 105476 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || ||||||| ||| || | || || || || ||| || Sbjct 105475 ATTCCTTCCTTATCCTGAATTTTGGCTTTGACGTTCTCGATCGTGTCTGACGCTTCAACC 105416 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || ||||| || || |||| ||||| ||||||||||||||| Sbjct 105415 TCCAATGTGATGGTCTTTCCCGTCAATGTTTTAACAAAAATTTGCATA 105368 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| ||||| | | ||| ||||| | ||| || ||||| || || ||||| || Sbjct 105823 CCACCACGCAAACGGAGAACCAAATGCAAGGTTGATTCTTTCTGAATATTGTAGTCAGAA 105764 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| | ||||| || || | || || | |||||| || || Sbjct 105763 AGTGTACGACCATCTTCCAGCTGTTTTCCGGCAAAGATTAACCTCTGTTGATCTGGAGGG 105704 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTT-TCTAC 15128 ||||||||||| || ||||||| ||| ||| |||| || || || | || || || Sbjct 105703 ATTCCTTCCTTATCCTGAATTTTGGCTTTGACATTTTCGATCGTGTC-CGATGCCTCAAC 105645 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||||||| || || |||| ||||| || |||||||||||| Sbjct 105644 TTCCAATGTAATGGTCTTTCCAGTCAATGTTTTAACGAAAATTTGCATA 105596 Score = 86.0 bits (94), Expect = 4e-12 Identities = 172/250 (69%), Gaps = 10/250 (4%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || || |||| | ||| || ||||| || || || ||||| || ||||| || | Sbjct 104911 CCGCCACGTAATCGAAGAACCAAGTGAAGAGTCGATTCCTTTTGGATATTGTAGTCA--G 104854 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || || ||||||| | ||||| ||||| | ||||||||||| ||||| || Sbjct 104853 ACAAGGTACGTCCGTCTTCAAGCTGTTTTCCAGCAAAGATCAAACGCTGCTGGTCAGGTG 104794 Query 15068 GAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 | || ||||| ||||| ||| ||||| ||| || | || ||||| || | || Sbjct 104793 GGATGCCTTCTTTGTCCTGAATCTTTGC-TTTCACGTTCTCGATAGTGTCAGAAGCCTCA 104735 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA----TTTGA 15182 || || | || ||||| || || |||| || || || ||||| |||||| | || Sbjct 104734 ACCTCAAGAGTTATGGTCTTTCCAGTCAACGTCTTCACGAAAATCTGCATAGTGCTCTGT 104675 Query 15183 AATAAATTTT 15192 |||||| ||| Sbjct 104674 AATAAAGTTT 104665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357339139042760